View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14506_high_42 (Length: 226)

Name: NF14506_high_42
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14506_high_42
NF14506_high_42
[»] chr2 (4 HSPs)
chr2 (72-220)||(36287392-36287540)
chr2 (1-72)||(6296796-6296867)
chr2 (1-72)||(28856225-28856297)
chr2 (4-58)||(17329288-17329342)
[»] chr5 (12 HSPs)
chr5 (1-73)||(31732689-31732761)
chr5 (1-72)||(21322921-21322992)
chr5 (1-72)||(24435064-24435135)
chr5 (2-63)||(2452096-2452158)
chr5 (1-73)||(8041142-8041214)
chr5 (1-37)||(13300405-13300441)
chr5 (5-73)||(36936392-36936462)
chr5 (1-72)||(36949826-36949897)
chr5 (5-72)||(557838-557907)
chr5 (5-72)||(562608-562677)
chr5 (5-72)||(12044014-12044083)
chr5 (5-72)||(36941147-36941216)
[»] scaffold0070 (2 HSPs)
scaffold0070 (1-72)||(59546-59617)
scaffold0070 (1-72)||(63748-63819)
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-72)||(34605-34676)
[»] chr8 (10 HSPs)
chr8 (1-76)||(34817616-34817691)
chr8 (1-72)||(37772857-37772928)
chr8 (8-72)||(8330262-8330326)
chr8 (1-72)||(21959523-21959594)
chr8 (1-54)||(25361624-25361677)
chr8 (27-72)||(25361578-25361623)
chr8 (1-70)||(29221189-29221259)
chr8 (5-76)||(31448743-31448816)
chr8 (5-72)||(4237224-4237293)
chr8 (5-72)||(4241963-4242032)
[»] chr7 (6 HSPs)
chr7 (1-72)||(27257358-27257429)
chr7 (1-72)||(40863960-40864031)
chr7 (1-72)||(40864281-40864352)
chr7 (8-73)||(11016793-11016858)
chr7 (5-72)||(9649844-9649912)
chr7 (24-73)||(47102692-47102743)
[»] chr4 (5 HSPs)
chr4 (5-72)||(7899838-7899905)
chr4 (5-72)||(3992653-3992720)
chr4 (1-77)||(34561546-34561622)
chr4 (1-61)||(41817924-41817984)
chr4 (5-72)||(13520869-13520937)
[»] chr3 (6 HSPs)
chr3 (5-72)||(45903239-45903306)
chr3 (1-72)||(10585066-10585137)
chr3 (1-72)||(632075-632146)
chr3 (5-72)||(3034786-3034855)
chr3 (5-72)||(3673708-3673777)
chr3 (5-72)||(8070819-8070888)
[»] chr1 (5 HSPs)
chr1 (1-76)||(41096831-41096906)
chr1 (1-72)||(33055920-33055991)
chr1 (7-69)||(27307360-27307423)
chr1 (37-72)||(40232288-40232323)
chr1 (12-72)||(13894402-13894462)
[»] scaffold0060 (2 HSPs)
scaffold0060 (1-72)||(51796-51867)
scaffold0060 (1-72)||(46857-46928)
[»] chr6 (2 HSPs)
chr6 (1-72)||(6111615-6111686)
chr6 (24-72)||(24588522-24588571)
[»] scaffold0015 (1 HSPs)
scaffold0015 (1-72)||(213254-213325)
[»] scaffold0061 (1 HSPs)
scaffold0061 (1-72)||(48842-48913)
[»] scaffold0017 (1 HSPs)
scaffold0017 (1-72)||(149721-149792)
[»] scaffold0484 (2 HSPs)
scaffold0484 (1-54)||(8053-8106)
scaffold0484 (27-72)||(8107-8152)
[»] scaffold0182 (1 HSPs)
scaffold0182 (5-74)||(8762-8833)


Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 72 - 220
Target Start/End: Complemental strand, 36287540 - 36287392
Alignment:
Q  72 agtttctcacagtgtaactgggaatttcttgtgggatactcaacagttcaaaggcaagagccatcttcttactgtgaaaatcagtcgactatatttcatc 171  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36287540 agtttctcaccgtgtaactgggaatttcttgtgggatactcaacagttcaaaggcaagagccatcttcttactgtgaaaatcagtcgactatatttcatc 36287441  T
Q  172 gtcttcgatatctggtctagaaaaacttgattaagtccaggttcatatc 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36287440 gtcttcgatatctggtctagaaaaacttgattaagtccaggttcatatc 36287392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 6296867 - 6296796
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6296867 cactacactagttctacccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 6296796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 28856225 - 28856297
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactc-aatttccacatatgttccaaca 72  Q
    ||||||| |||||||| |||||||| |||||| ||||||||||||||||| ||||| ||||||| ||||||||    
T  28856225 cactacattagttctacccattgtgtgaatttatgtttagtcaattactcaaattttcacatattttccaaca 28856297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 17329288 - 17329342
Alignment:
Q  4 tacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttcca 58  Q
    |||| |||||||| ||||| ||| ||||| |||||||||||||||||||||||||    
T  17329288 tacaatagttctacccattatggaaatttatgtttagtcaattactcaatttcca 17329342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 31732689 - 31732761
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaacag 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31732689 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaacag 31732761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 21322992 - 21322921
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21322992 cactacactagttctacccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 21322921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 24435135 - 24435064
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24435135 cactacactagttctacccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 24435064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 2452096 - 2452158
Alignment:
Q  2 actacactagttctatccattgtgggaatttgtgtttagtcaattactcaa-tttccacatat 63  Q
    |||||| || ||||| || || ||||||||||||||||||||||||||||| |||||||||||    
T  2452096 actacattaattctacccgttatgggaatttgtgtttagtcaattactcaattttccacatat 2452158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 8041214 - 8041142
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaacag 73  Q
    ||||| ||||||| || ||| | ||| | ||||| ||||||||||||||||||||||||| || |||||||||    
T  8041214 cactatactagttgtacccactatggaattttgtatttagtcaattactcaatttccacacatcttccaacag 8041142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 13300441 - 13300405
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtt 37  Q
    |||||||||||||||| ||||||||||||||||||||    
T  13300441 cactacactagttctacccattgtgggaatttgtgtt 13300405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 36936462 - 36936392
Alignment:
Q  5 acactagttctatccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaacag 73  Q
    |||||||||||| |||   |||||||||||||||||||  ||  |||||||||||||| ||||||||||||    
T  36936462 acactagttctacccaacatgggaatttgtgtttagtctgtttaactcaatttccacacatgttccaacag 36936392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 36949826 - 36949897
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    ||||||||||||||   | ||| || ||||||||||||||| ||||||||||||| |||| ||||| |||||    
T  36949826 cactacactagttccgcctattatgagaatttgtgtttagttaattactcaattttcacacatgtttcaaca 36949897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 557838 - 557907
Alignment:
Q  5 acactagttctatccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaaca 72  Q
    |||||||||||| |||   |||||||||||||||||||  ||  |||||||||||||| |||||||||||    
T  557838 acactagttctacccaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 557907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 562608 - 562677
Alignment:
Q  5 acactagttctatccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaaca 72  Q
    |||||||||||| |||   |||||||||||||||||||  ||  |||||||||||||| |||||||||||    
T  562608 acactagttctacccaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 562677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 12044083 - 12044014
Alignment:
Q  5 acactagttctatccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaaca 72  Q
    |||||||||||| |||   |||||||||||||||||||  ||  |||||||||||||| |||||||||||    
T  12044083 acactagttctacccaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 12044014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 36941216 - 36941147
Alignment:
Q  5 acactagttctatccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaaca 72  Q
    |||||||||||| |||   |||||||||||||||||||  ||  |||||||||||||| |||||||||||    
T  36941216 acactagttctacccaacatgggaatttgtgtttagtctgtttaactcaatttccacacatgttccaaca 36941147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 59546 - 59617
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  59546 cactacactagttctacccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 59617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 63748 - 63819
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  63748 cactacactagttctacccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 63819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 34676 - 34605
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34676 cactacactagttctacccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 34605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 34817691 - 34817616
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaacagttt 76  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  34817691 cactacactagttctatccattgtgggaatttgtgtttaatcaattactcaattttcacatatgttccaacagttt 34817616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 37772857 - 37772928
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37772857 cactacactagttctacccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 37772928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 8330326 - 8330262
Alignment:
Q  8 ctagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8330326 ctagttctacccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 8330262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 21959523 - 21959594
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    ||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21959523 cactacattaattctacccattgtgggaatttgtgtttagtcaattactcaatttcaacatatgttccaaca 21959594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 25361677 - 25361624
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatt 54  Q
    |||||||||||||||| ||||| ||||||||||||||||||| |||||||||||    
T  25361677 cactacactagttctacccattatgggaatttgtgtttagtccattactcaatt 25361624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 25361623 - 25361578
Alignment:
Q  27 gaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||    
T  25361623 gaatttttgtttagtcaattactcaatttccacatatgttacaaca 25361578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 29221189 - 29221259
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaatt-actcaatttccacatatgttccaa 70  Q
    |||||||||||||||||||| ||| | | |||||||||| || ||| ||||||||||||||||| ||||||    
T  29221189 cactacactagttctatccaatgtagaattttgtgtttattccattaactcaatttccacatatcttccaa 29221259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 31448816 - 31448743
Alignment:
Q  5 acactagttctatccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaacagttt 76  Q
    |||||||||||| |||   |||||||||||||||||||  ||  |||||||||||||| |||||||||||||||    
T  31448816 acactagttctacccaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaacagttt 31448743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 4237293 - 4237224
Alignment:
Q  5 acactagttctatccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaaca 72  Q
    |||||||||||| |||   |||||||||||||||||||  ||  |||||||||||||| |||||||||||    
T  4237293 acactagttctacccaacatgggaatttgtgtttagtctgtttaactcaatttccacacatgttccaaca 4237224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 4242032 - 4241963
Alignment:
Q  5 acactagttctatccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaaca 72  Q
    |||||||||||| |||   |||||||||||||||||||  ||  |||||||||||||| |||||||||||    
T  4242032 acactagttctacccaacatgggaatttgtgtttagtctgtttaactcaatttccacacatgttccaaca 4241963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 27257358 - 27257429
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27257358 cactacactagttctacccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 27257429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 40864031 - 40863960
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40864031 cactacactagttctacccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 40863960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 40864352 - 40864281
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40864352 cactacactagttctacccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 40864281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 11016858 - 11016793
Alignment:
Q  8 ctagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaacag 73  Q
    ||||||||| | ||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  11016858 ctagttctacctattatgggaatttgtatttagtcaattactcaatttccacacatgttccaacag 11016793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 9649912 - 9649844
Alignment:
Q  5 acactagttctatccattgtgggaatttgtgtttagtcaatta-ctcaatttccacatatgttccaaca 72  Q
    |||||||||||| |||   |||||||||||||||||||  ||| ||||||||||||| |||||||||||    
T  9649912 acactagttctacccaacatgggaatttgtgtttagtcttttaactcaatttccacacatgttccaaca 9649844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 47102692 - 47102743
Alignment:
Q  24 tgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaacag 73  Q
    |||||||||||||||||||  ||  |||||||||||||| ||||||||||||    
T  47102692 tgggaatttgtgtttagtctttttaactcaatttccacacatgttccaacag 47102743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 7899905 - 7899838
Alignment:
Q  5 acactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7899905 acactagttctacccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 7899838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 3992720 - 3992653
Alignment:
Q  5 acactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3992720 acactagttctacccattgtgggaatttgtgtttagtcaattactcaatttccgcatatgttccaaca 3992653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 34561546 - 34561622
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaacagtttc 77  Q
    ||||| |||| ||||| ||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  34561546 cactatactaattctacccattataggaatttgtgtttagtcaattactcaatttccacaaatgttccaacaatttc 34561622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 41817924 - 41817984
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacat 61  Q
    ||||||| || ||||| ||||||| |||||||||||||| |||||||||||||||||||||    
T  41817924 cactacattaattctacccattgtaggaatttgtgtttaatcaattactcaatttccacat 41817984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 13520937 - 13520869
Alignment:
Q  5 acactagttctatccattgtgggaatttgtgtttagtcaatta-ctcaatttccacatatgttccaaca 72  Q
    |||||||||||| |||   |||||||||||||||||||  ||| ||||||||||||| |||||||||||    
T  13520937 acactagttctacccaacatgggaatttgtgtttagtcttttaactcaatttccacacatgttccaaca 13520869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 45903306 - 45903239
Alignment:
Q  5 acactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45903306 acactagttctacccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 45903239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 10585137 - 10585066
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  10585137 cactacactagttctacccattgtgggaatttgtgtttagtcaattactcaattttcacatatgctccaaca 10585066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 632075 - 632146
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    ||||| ||||||| || ||||||||  |||||||||||||||||||||||||||| ||||||||||||||||    
T  632075 cactaaactagttttacccattgtgaaaatttgtgtttagtcaattactcaattttcacatatgttccaaca 632146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 3034786 - 3034855
Alignment:
Q  5 acactagttctatccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaaca 72  Q
    |||||||||||| |||   |||||||||||||||||||  ||  |||||||||||||| |||||||||||    
T  3034786 acactagttctacccaacatgggaatttgtgtttagtctgtttaactcaatttccacacatgttccaaca 3034855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 3673708 - 3673777
Alignment:
Q  5 acactagttctatccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaaca 72  Q
    |||||||||||| |||   |||||||||||||||||||  ||  |||||||||||||| |||||||||||    
T  3673708 acactagttctacccaacatgggaatttgtgtttagtctgtttaactcaatttccacacatgttccaaca 3673777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 8070819 - 8070888
Alignment:
Q  5 acactagttctatccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaaca 72  Q
    |||||||||||| |||   |||||||||||||||||||  ||  |||||||||||||| |||||||||||    
T  8070819 acactagttctacccaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 8070888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 41096906 - 41096831
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaacagttt 76  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41096906 cactacactagttctacccattgtggaaatttgtgtttagtcaattactcaatttctacatatgttccaacagttt 41096831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 33055920 - 33055991
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    |||| |||||| |||| |||||||||||||||||| |||||||||||| |||||| ||||||||||||||||    
T  33055920 cactgcactaggtctacccattgtgggaatttgtgcttagtcaattacacaattttcacatatgttccaaca 33055991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 27307423 - 27307360
Alignment:
Q  7 actagttctatccattgtgggaatttgtgtttagtcaatta-ctcaatttccacatatgttcca 69  Q
    ||||| |||||||| |||||||||||||||||||||  ||| |||||| |||||| ||||||||    
T  27307423 actaggtctatccaatgtgggaatttgtgtttagtcttttacctcaatatccacacatgttcca 27307360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 72
Target Start/End: Complemental strand, 40232323 - 40232288
Alignment:
Q  37 ttagtcaattactcaatttccacatatgttccaaca 72  Q
    ||||||||||||||||||||||||||| ||||||||    
T  40232323 ttagtcaattactcaatttccacatatattccaaca 40232288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 13894402 - 13894462
Alignment:
Q  12 ttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    ||||||||||| | ||||||| |||| || |||||||||||||||||   |||||||||||    
T  13894402 ttctatccattattggaatttatgttcagacaattactcaatttccatgcatgttccaaca 13894462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 51867 - 51796
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  51867 cactacactaattctacccattgtgggaatttgtgtttagtcaattactcaattttcacatatgttccaaca 51796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 46928 - 46857
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    |||||||||||||||| ||||||||  |||||||||||||||||||||||||| ||||||||||||||||||    
T  46928 cactacactagttctacccattgtgaaaatttgtgtttagtcaattactcaatctccacatatgttccaaca 46857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 6111686 - 6111615
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  6111686 cactacactagttctacccattgtgggaatttgtgtttagtcaattactcaatttccacgtatgttcaaaca 6111615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 24588571 - 24588522
Alignment:
Q  24 tgggaatttgtgtttagtcaatt-actcaatttccacatatgttccaaca 72  Q
    |||||||||||||||||||  || |||||||||||||| |||||||||||    
T  24588571 tgggaatttgtgtttagtctttttactcaatttccacacatgttccaaca 24588522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 213325 - 213254
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    ||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  213325 cactacattaattctacccattgtgggaatttgtgtttagtcaattactcaatttcaacatatgttccaaca 213254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 48913 - 48842
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    |||||||||||||||  ||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||    
T  48913 cactacactagttcttcccattgtggaaatttgtatttagtcaagtactcaatttccacatatgttccaaca 48842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 149721 - 149792
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    |||||||||||||||  ||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||    
T  149721 cactacactagttcttcccattgtggaaatttgtatttagtcaagtactcaatttccacatatgttccaaca 149792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 8053 - 8106
Alignment:
Q  1 cactacactagttctatccattgtgggaatttgtgtttagtcaattactcaatt 54  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  8053 cactacactagttctacccattatgggaatttgtgtttagtcaattactcaatt 8106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 8107 - 8152
Alignment:
Q  27 gaatttgtgtttagtcaattactcaatttccacatatgttccaaca 72  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||    
T  8107 gaatttttgtttagtcaattactcaatttccacatatgttacaaca 8152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 8833 - 8762
Alignment:
Q  5 acactagttctatccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaacagt 74  Q
    |||||||||||| |||   |||||||||||||||||||  ||  |||||||||||||| |||||||||||||    
T  8833 acactagttctacccaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaacagt 8762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University