View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14506_high_8 (Length: 580)
Name: NF14506_high_8
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Original strand, 23398012 - 23398426
Alignment:
| Q |
19 |
catctattcatagcttttgtactatattttt-ctattgaaagtttcatatggaaattcggatggaagcaagagcatgtagctgtgagattaacgatggtg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
23398012 |
catctattcatagcttttgtactatattttttctattgaaagtttcatatggaaattcggatggaagcaagagcatgcagctgtgagattaacgatgttg |
23398111 |
T |
|
| Q |
118 |
ctgat---gaagatgaagacacaaattcatgataatcatccaatgataattgcaagttgattaacttgcttgatcatttgggcaactgaacatcctttgg |
214 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23398112 |
ctgatgatgaagatgaagacacaaattcatgataatcatccaatgataattgcaagttgattaacttgcttgatcatttgggcaactgaacatcctttgg |
23398211 |
T |
|
| Q |
215 |
cagtaacactattacaagatccttgctcctctacacctttatttttacgagaaatatttttaaaatatttcatacatgtttagatttacgatgagattga |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23398212 |
cagtaacactattacaagatccttgctcctctacacctttatttttacgagaaatatttttaaaatatttcatacatgtttagatttacgatgagattga |
23398311 |
T |
|
| Q |
315 |
cagaatcaccaatgtcatggtgattttgtcaaactcacaactgatccaaacgtacacatgtatgcagttccatgaaacaatattatacaagttatttggt |
414 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23398312 |
cagaatcaccaatgtgatggtgattttgtcaaactcacaactgatccaaacgtacacatgtatgcagttccatgaaacaatattatacatgttatttggt |
23398411 |
T |
|
| Q |
415 |
ggttgcttactatag |
429 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
23398412 |
ggttgcttactatag |
23398426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University