View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14506_high_9 (Length: 508)
Name: NF14506_high_9
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 18 - 501
Target Start/End: Original strand, 38149304 - 38149783
Alignment:
| Q |
18 |
catcatgcttcctttctactttgcagaaagggactccctgcaaatggatggatacaagggaagtcctcattgtaaatcctactcgtgctgatcaagttga |
117 |
Q |
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| T |
38149304 |
catcatgcttcctttctactttgcagaaagggactccctgcaaatggatggatacaagggaagtcctcattgtaaatcctactcatgctgatcaagttga |
38149403 |
T |
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| Q |
118 |
tcctgattacttggaaactgaacaaagacttaataaatggtactctcttaatccatctaaggtaatcattgctactggatttatagcaagcacacctcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38149404 |
tcctgattacttggaaactgaacaaagacttaataaatggtactctcttaatccatctaaggtaatcattgctactggatttatagcaagcacacctcaa |
38149503 |
T |
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| Q |
218 |
aacattcccactactctcaagagagatggaagtgacttctccgcagcaattatgggcgcgatattcagggcacgtcaagtcaccatttggaccgatgttg |
317 |
Q |
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| T |
38149504 |
aacattcccactactctcaagagagatggaagtgacttctccgcagcaattatgggcgcgatattcagggcacgtcaagtcaccatttggaccgatgttg |
38149603 |
T |
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| Q |
318 |
atggtgtatatagtgcagatcctagaaaaggtttgttctgcttcttatttcatgtgctggtttcaccatcagtggatattatacgatggtcatcgaattt |
417 |
Q |
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| T |
38149604 |
atggtgtatatagtgcagatcctagaaaaggtttgtt---cttcttatttcatgtgctggtttcaccatcagtggatattatacgatggtcatcgaattt |
38149700 |
T |
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| Q |
418 |
taattctaataatacttatattgatacataccatggcannnnnnnncttcatttacttcttcactctctatatattgatgatgt |
501 |
Q |
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| T |
38149701 |
taattctaataatacttatatcgatacataccatggca-tttttttcttcatttacttcttcactctctatatattgatgatgt |
38149783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 56 - 353
Target Start/End: Complemental strand, 35096988 - 35096691
Alignment:
| Q |
56 |
tgcaaatggatggatacaagggaagtcctcattgtaaatcctactcgtgctgatcaagttgatcctgattacttggaaactgaacaaagacttaataaat |
155 |
Q |
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||||||||||||||||||||||||||| | ||||||||||||||| || || ||||||||||||| || || |||||| |||| | ||||||| | |||| |
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| T |
35096988 |
tgcaaatggatggatacaagggaagtcttgattgtaaatcctactagttctaatcaagttgatcccgactatttggaatctgagcgaagacttgagaaat |
35096889 |
T |
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| Q |
156 |
ggtactctcttaatccatctaaggtaatcattgctactggatttatagcaagcacacctcaaaacattcccactactctcaagagagatggaagtgactt |
255 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||| || || |||||||||||| |||| ||||| ||||| | ||| ||||||||||||| || |
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| T |
35096888 |
ggtactctctgaatccatgtaaggtaatcattgctactgggttcattgcaagcacacctgaaaatattcctactacattgaagcgagatggaagtgattt |
35096789 |
T |
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| Q |
256 |
ctccgcagcaattatgggcgcgatattcagggcacgtcaagtcaccatttggaccgatgttgatggtgtatatagtgcagatcctagaaaaggtttgt |
353 |
Q |
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||| |||||||||||||| || |||| || || ||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35096788 |
ctcggcagcaattatgggttcgctatttagagctcgtcaggtcacaatttggacagatgttgatggtgtgtatagtgcagatcctagaaaaggtttgt |
35096691 |
T |
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