View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14506_low_11 (Length: 463)
Name: NF14506_low_11
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 12 - 449
Target Start/End: Complemental strand, 3046161 - 3045712
Alignment:
| Q |
12 |
atgaacattacataatagagttaactaataagtgcatctaaagcactaattaagaagttaaatatatacaagagttagggttcaaatcgtgcacacccca |
111 |
Q |
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| T |
3046161 |
atgaacattacataatagagttagctaataaatgcatttaaggcactggttaagaagttaaatatatacaagagttagggttcgaatcgtgcacacccca |
3046062 |
T |
|
| Q |
112 |
acttaaaatatgaatttttaaccattacacgattacttgacctaaaataagtaaacgttagaagatgaaattgattttcttcaagagtggttacattatt |
211 |
Q |
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| T |
3046061 |
ccttaaaatatgaatttctaaccattacacaattacttgacctaaaataagtaaacgttagaagatgaaattgattttcttcaagagtggttacattatt |
3045962 |
T |
|
| Q |
212 |
gatgtttcacttattagtacagacaattaataaatcgatcgaatacgaatttcaatactcccacatgaaataatatctcaatgagtgtaagtggatacgg |
311 |
Q |
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| T |
3045961 |
gatgtttcacttattagtacagacaattaataaatcgatcgaatacgaatttcaatactcccacatgaaataatatctcaatgagtgtaagtggatacgg |
3045862 |
T |
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| Q |
312 |
atcttcttaattaattgtatttctta-ctaatata-----------aacattacaactataaaatagtcatgtttggggaattaaaccttcaaaaatata |
399 |
Q |
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|||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3045861 |
atcttcttaattaattgtatttcttatataacatatcccttaactgaacattacaactataaaatagtcatgtttggggaattaaaccttcaaaaatata |
3045762 |
T |
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| Q |
400 |
ttctcaggtttcttcttttatacttttctgtctaccccttctactacatg |
449 |
Q |
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| T |
3045761 |
ttctcaggtttcttcttttatacttttctgtctaccccttctactacatg |
3045712 |
T |
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