View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14506_low_12 (Length: 456)
Name: NF14506_low_12
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Original strand, 43063874 - 43064301
Alignment:
| Q |
18 |
ggaaggatttgattaacaaaaaggcatgaatgtggaagcataaaatgatgcgcttaataccatatagagaaa-ttatgaacaaaatgatttttgctcatt |
116 |
Q |
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| T |
43063874 |
ggaaggatttgattaacaaaaaggcatgaatgtggaagcataaaatgatgcgcttaataccatatagagaaaattatgaacaaaatgatttttgctcatt |
43063973 |
T |
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| Q |
117 |
gattgtaaatgatctatttacaacaaattgatgagggaaaaatatagctagagattaactaaccgttacaagaagagatttgggccaaatatgagtattg |
216 |
Q |
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| T |
43063974 |
gattgtaaatgatctatttacaacaaattgatgagggaaaaatatagttagagattaactaaccgttacaagaagagatttggaccaaatatgagtattg |
43064073 |
T |
|
| Q |
217 |
tgcaagggttgttataagaaaataacatgatgattgatctttaagcaccaagtggtgcatgaggttgctctcatgcacccaccaaattaactacaatcaa |
316 |
Q |
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| T |
43064074 |
tgcaagggttgttataagaaaataacatgaccattgatcgttaggcaccaagtggtgcatgaggttgctctcatgcacccacca----aactacaattaa |
43064169 |
T |
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| Q |
317 |
ctgctgttcggcatttttgagatcggttgtgacactctttaaattggttcacccgatttaaaaagtgcatcaaaccgtagttaactaactttcaactttt |
416 |
Q |
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| T |
43064170 |
ctgttgttcagcatttttgagatcggttgcgacactctttaaattggttcatccgatttaaaaagtgcatcaaacggtagttaattaactttcaactttt |
43064269 |
T |
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| Q |
417 |
cttgggta-ctacagaacaattgtagaataat |
447 |
Q |
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| T |
43064270 |
tttgggtacctacagaacaattgtaaaataat |
43064301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 43182457 - 43182324
Alignment:
| Q |
19 |
gaaggatttgattaacaaaaaggcatgaatgtggaa----gcataaaatgatgcgc-------ttaataccatatagag-aaattatgaacaaaatgatt |
106 |
Q |
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| T |
43182457 |
gaaggatttgattaacaaaaaggcttgaatgtggaagcatgcataaaatgatgcgcctaatggctaataccatatagagaaaatgatgaatagaatgaat |
43182358 |
T |
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| Q |
107 |
tttgctcattgattgtaaatgatctatttacaac |
140 |
Q |
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| T |
43182357 |
tgagttcattgattgtaaatgatctagttacaac |
43182324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 423
Target Start/End: Complemental strand, 43182083 - 43181969
Alignment:
| Q |
309 |
acaatcaactgctgttcggcatttttgagatcggttgtgacactctttaaattggttcacccgatttaaaaagtgcatcaaaccgtagttaactaacttt |
408 |
Q |
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| T |
43182083 |
acaattaactaccgttcgacatttttgagattggttgaaacattttttaaatcggttcatccgattttaaaagtgtgtcgaacggtagttaactaccgtt |
43181984 |
T |
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| Q |
409 |
caacttttcttgggt |
423 |
Q |
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| T |
43181983 |
taatttttcttgggt |
43181969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 43180259 - 43180194
Alignment:
| Q |
18 |
ggaaggatttgattaacaaaaaggcatgaatgtggaagcataaaatgatgcgcttaataccatata |
83 |
Q |
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|||||||||||||||||| ||||||||||||| |||| | ||||||||||| ||||||||||| |
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| T |
43180259 |
ggaaggatttgattaacagaaaggcatgaatgcagaagtgtgaaatgatgcgccgaataccatata |
43180194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 181
Target Start/End: Complemental strand, 43182303 - 43182256
Alignment:
| Q |
134 |
ttacaacaaattgatgagggaaaaatatagctagagattaactaaccg |
181 |
Q |
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| T |
43182303 |
ttacaacaaattgaagagtgaaaaatacagttagagattaactaaccg |
43182256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 383
Target Start/End: Original strand, 31455350 - 31455402
Alignment:
| Q |
331 |
ttttgagatcggttgtgacactctttaaattggttcacccgatttaaaaagtg |
383 |
Q |
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||||||||||| ||| |||| | ||||||| |||||||||||||||||||||| |
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| T |
31455350 |
ttttgagatcgattgagacaatttttaaatcggttcacccgatttaaaaagtg |
31455402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 270
Target Start/End: Original strand, 23912449 - 23912491
Alignment:
| Q |
228 |
ttataagaaaataacatgatgattgatctttaagcaccaagtg |
270 |
Q |
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| T |
23912449 |
ttataagaaaataacatgattattgctctttaggcaccaagtg |
23912491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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