View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14506_low_13 (Length: 450)
Name: NF14506_low_13
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 5 - 435
Target Start/End: Complemental strand, 24129350 - 24128920
Alignment:
| Q |
5 |
atgaatattgggactttctgcaaaattaaggaccatacgttaaattcttctgttagaatggaatatttgatcataaatttaggtatgtgttttacctgga |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
24129350 |
atgaatattgggactttctgcaaaattaaggaccatacgttaaattcttctgttagaatggaatatttgatcgtaaattttggtatgtgttttacctgga |
24129251 |
T |
|
| Q |
105 |
cgaaaaaccctccagccagcatgaaggtcatcaccgttaccgaagccaaagttgttgctctttttaagtccataagcgtagcaccgatagcaagtccaag |
204 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24129250 |
cgaaaaatcctccagccagcatgaaggtcatcaccgttaccgaagccaaagttgttgctcttttcaagtccataagcgtagcaccgatagcaagtccaag |
24129151 |
T |
|
| Q |
205 |
accctgcatcacaaccagccattgttagcacggtaatctagctattttagccaatattataaaaaccgaacatgcgagacctttaggtcgtgattcaact |
304 |
Q |
| |
|
||||||| || ||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24129150 |
accctgcttcgcaatcagccattgttagcaccgtaagctagctattttagccaatattataaaaaccgaacatgcgagacctttaggtcgtggttcaact |
24129051 |
T |
|
| Q |
305 |
gccttaaactgctcaaacctaggtaaaattgtgatagaatcgccaatactaccaaacagtaataaaggctcggttcaaggttcaaccagctgaactgttt |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24129050 |
gccttaaactgctcaaacctaggtaaaattgtgatagaatcgccaatattaccaaacagtaataaaggctcggttcaaggttcaaccagctgaactgttt |
24128951 |
T |
|
| Q |
405 |
tgttcggtttttaaaacactgagtttaattt |
435 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |
|
|
| T |
24128950 |
tgttcggtttttaaaactctgagtttaattt |
24128920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 68 - 317
Target Start/End: Complemental strand, 24147248 - 24146997
Alignment:
| Q |
68 |
tatttgatcataaatttaggtatgtgtttt-acctggacgaaaaaccctccagccagcatgaaggtcatcaccgttaccgaagccaaagttgttgctctt |
166 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||| ||||| |||||||||||||||||| ||||||| ||||| ||| ||||||||||||| ||| |
|
|
| T |
24147248 |
tatttgatcattaatttaggtatgtgttttcacctggacaaaaaatcctccagccagcatgaagatcatcacggttacggaacccaaagttgttgcactt |
24147149 |
T |
|
| Q |
167 |
tttaagtccataagcgtagcaccgatagcaagtccaagaccctgcatcacaaccagccattgttagcacggtaatct-agctattttagccaatattata |
265 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| || || |||||||| |||| || | |
|
|
| T |
24147148 |
ttcgagtccataagcacagcaccgatagcaagtccaagaccctgcttcacaaccagccattgttagctctgtaagctaagatattttagtcaatgtttca |
24147049 |
T |
|
| Q |
266 |
aaaaccgaacatgcgagacctttaggtcgtgattcaactgccttaaactgct |
317 |
Q |
| |
|
||||| ||||| ||||||||| |||||| ||||||||| |||||||||||| |
|
|
| T |
24147048 |
aaaactgaacaggcgagacctctaggtcatgattcaaccaccttaaactgct |
24146997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 24147331 - 24147276
Alignment:
| Q |
5 |
atgaatattgggactttctgcaaaattaaggaccatacgttaaattcttctgttag |
60 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| | |||||||||||||||||| |
|
|
| T |
24147331 |
atgaatattgggactttctgcaaaattaagtaccacatgttaaattcttctgttag |
24147276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 209
Target Start/End: Original strand, 43530684 - 43530777
Alignment:
| Q |
116 |
ccagccagcatgaaggtcatcaccgttaccgaagccaaagttgttgctctttttaagtccataagcgtagcaccgatagcaagtccaagaccct |
209 |
Q |
| |
|
||||||| ||| || ||||| || ||||| ||||||||||||||||| ||||| |||||||| || ||||| || |||||||||||||| |||| |
|
|
| T |
43530684 |
ccagccaacataaaagtcatgacagttactgaagccaaagttgttgcccttttcaagtccattagtgtagctccaatagcaagtccaagtccct |
43530777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University