View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14506_low_15 (Length: 439)
Name: NF14506_low_15
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 5 - 389
Target Start/End: Original strand, 11195153 - 11195537
Alignment:
| Q |
5 |
caaaggtcattctcttaagaatcaaagattacacataaaataaataaataaagacttcgagatttacccattcgagttatatgtttttaaagtcactatc |
104 |
Q |
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| T |
11195153 |
caaaggtcattctcttaagaatcaaagattacacataaaataaataaataaagacttcgaggtttacccattcgagttatatgtttttaaagtcactaac |
11195252 |
T |
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| Q |
105 |
atcaccatatgttgatccatgctcgtcttctataggaacatgattattgataaattttgcagttnnnnnnntaggcaaactatcttatatttaggaacac |
204 |
Q |
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| T |
11195253 |
atcaccatatgttgatccatgttcgtcttatgtagggatatagttattgataaattttgcagttaaaataataggtaaaatatcttatatttaggaacac |
11195352 |
T |
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| Q |
205 |
atcagaaatacctaaggaaaaacactttcttggtggtgccatatcaatgacccaaagtaagatcaaataggtgatggtgtatagagaacggaaaattatt |
304 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11195353 |
atcagaaatacccaaggaaaaatactttcttggtggtgccatatcaatgacccaaagtaagatcaaataggtgatggtgtatagagaacggaaaactatt |
11195452 |
T |
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| Q |
305 |
tttgtacattcattacccattctacatatgagagtgatgtgcgttagatagatatgagataagaatatgatatgatagaaagaaa |
389 |
Q |
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| T |
11195453 |
tttgtacattcattacccattctatatatgagagtgatgtgcgttggatagatatgagataagaatatgatatgatagaaagaaa |
11195537 |
T |
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