View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14506_low_16 (Length: 429)
Name: NF14506_low_16
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 428
Target Start/End: Complemental strand, 15793725 - 15793318
Alignment:
| Q |
18 |
gtaaattgcaaaatcatgtcatggtatgattgccgagacctcataaatcttaatttagtcgcaaaaaagattaccttgattttccgaaacttatttgatg |
117 |
Q |
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| T |
15793725 |
gtaaattgcaaaatcatgtcatggtatgattgccgagacctcataaatcttaatttagtcacaaaaaagattaccttgattttccgaaacttatttgatg |
15793626 |
T |
|
| Q |
118 |
attgcaatgaagacttctttataaagcttgtctcttaatcgtagagatctcaaccaagatttttcagctcgatgcaattgcgatgaacttctctcatgaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
15793625 |
attgcaatgaagacttctttataaagcttgtctcttaatcgtagagatctcaaccaagatttttcaggtctatgcaattgcgatgaacttctctcatgaa |
15793526 |
T |
|
| Q |
218 |
ttagccactcgacgtcttatctcttgaaactcccaaaaacactttgtcatnnnnnnngttaccttgattttaggagacgtatttgatgattgcaataaag |
317 |
Q |
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| T |
15793525 |
ttagccact---cttcttatctcttgaaactcccaaaaacactttgtcataaaaaaagttaccttgattttaggagacttatttgatgatttcaataaag |
15793429 |
T |
|
| Q |
318 |
acttgctttataaagcttgtctcttgatcgtagagatctcgacaaagattttttatgtctatgctatcgcgaacttctcacgtgaattagtcactcttct |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15793428 |
acttgctttataaagcttgtctcttgatcgtagagatctcgacaaagattttttatgtctatgctatcgtgaacttctcacgtgaattagtcactcttct |
15793329 |
T |
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| Q |
418 |
ttcttctctct |
428 |
Q |
| |
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||||| ||||| |
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| T |
15793328 |
ttcttatctct |
15793318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 88 - 389
Target Start/End: Complemental strand, 15793470 - 15793166
Alignment:
| Q |
88 |
ttaccttgattttccgaaacttatttgatgattgcaatgaagactt-ctttataaagcttgtctcttaatcgtagagatctcaaccaagatttttcagct |
186 |
Q |
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| T |
15793470 |
ttaccttgattttaggagacttatttgatgatttcaataaagacttgctttataaagcttgtctcttgatcgtagagatctcgacaaagattttttatgt |
15793371 |
T |
|
| Q |
187 |
cgatgcaattgcgatgaacttctctcatgaattagccactcgacgt-cttatctcttgaaactcccaaaaacactttgtcatnnnnnnn----gttacct |
281 |
Q |
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| T |
15793370 |
ctatgctatcg---tgaacttctcacgtgaattagtcactcttctttcttatctcttgaaactcccaaagaaacttggtcattaaaaaaaaaagttacct |
15793274 |
T |
|
| Q |
282 |
tgattttaggagacgtatttgatgattgcaataaagacttgctttataaagcttgtctcttgatcgtagagatctcgacaaagattttttatgtctatgc |
381 |
Q |
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||||||| |||||| || |||||| ||| |||||| ||||||||||||||||||| |||||||| |||| |||||| |||||||||||| | |||||||| |
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| T |
15793273 |
tgattttcggagacttagttgatgtttgtaataaaaacttgctttataaagcttgcctcttgattgtagggatctcaacaaagatttttcaggtctatgc |
15793174 |
T |
|
| Q |
382 |
tatcgcga |
389 |
Q |
| |
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||| |||| |
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| T |
15793173 |
tatagcga |
15793166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 88 - 212
Target Start/End: Complemental strand, 15793279 - 15793154
Alignment:
| Q |
88 |
ttaccttgattttccgaaacttatttgatgattgcaatgaagactt-ctttataaagcttgtctcttaatcgtagagatctcaaccaagatttttcagct |
186 |
Q |
| |
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|||||||||||||| || ||||| |||||| ||| ||| || |||| |||||||||||||| ||||| || |||| ||||||||| |||||||||||| | |
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| T |
15793279 |
ttaccttgattttcggagacttagttgatgtttgtaataaaaacttgctttataaagcttgcctcttgattgtagggatctcaacaaagatttttcaggt |
15793180 |
T |
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| Q |
187 |
cgatgcaattgcgatgaacttctctc |
212 |
Q |
| |
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| |||| || |||||||||||||||| |
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| T |
15793179 |
ctatgctatagcgatgaacttctctc |
15793154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 357
Target Start/End: Complemental strand, 15801489 - 15801429
Alignment:
| Q |
297 |
tatttgatgattgcaataaagacttgctttataaagcttgtctcttgatcgtagagatctc |
357 |
Q |
| |
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|||||||||||| |||| | ||||| ||||||||| ||||| ||||||| | ||||||||| |
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| T |
15801489 |
tatttgatgatttcaattaggactttctttataaaccttgtatcttgattgcagagatctc |
15801429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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