View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14506_low_18 (Length: 402)

Name: NF14506_low_18
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14506_low_18
NF14506_low_18
[»] chr8 (13 HSPs)
chr8 (11-320)||(30727760-30728073)
chr8 (316-387)||(30729237-30729308)
chr8 (1-46)||(12734028-12734073)
chr8 (17-55)||(9790153-9790191)
chr8 (1-55)||(35973480-35973534)
chr8 (1-55)||(5569205-5569258)
chr8 (1-55)||(8673693-8673747)
chr8 (1-55)||(28557222-28557276)
chr8 (6-55)||(1155239-1155288)
chr8 (13-54)||(14426226-14426267)
chr8 (1-54)||(23982222-23982274)
chr8 (8-37)||(36068918-36068947)
chr8 (1-41)||(28540661-28540701)
[»] chr3 (6 HSPs)
chr3 (217-359)||(7733061-7733196)
chr3 (1-52)||(19900225-19900276)
chr3 (1-55)||(33291080-33291134)
chr3 (1-54)||(35539540-35539593)
chr3 (1-42)||(41211724-41211765)
chr3 (1-46)||(46006171-46006216)
[»] chr6 (7 HSPs)
chr6 (1-55)||(9491849-9491903)
chr6 (10-55)||(7694026-7694071)
chr6 (1-52)||(25099056-25099107)
chr6 (12-51)||(3705825-3705864)
chr6 (10-77)||(32977475-32977544)
chr6 (13-54)||(32658531-32658572)
chr6 (1-41)||(6988166-6988206)
[»] chr4 (7 HSPs)
chr4 (1-51)||(30865871-30865921)
chr4 (8-39)||(24030617-24030648)
chr4 (1-36)||(39055157-39055192)
chr4 (1-55)||(10180707-10180761)
chr4 (1-35)||(49211023-49211057)
chr4 (3-41)||(53779449-53779487)
chr4 (9-37)||(28509495-28509523)
[»] chr2 (6 HSPs)
chr2 (1-55)||(32887696-32887750)
chr2 (5-55)||(37074726-37074776)
chr2 (1-55)||(40999654-40999708)
chr2 (18-55)||(28857051-28857088)
chr2 (8-40)||(6459070-6459102)
chr2 (1-37)||(13022818-13022854)
[»] chr5 (5 HSPs)
chr5 (1-36)||(22579668-22579703)
chr5 (1-37)||(6761462-6761498)
chr5 (1-40)||(2375539-2375578)
chr5 (18-55)||(3558748-3558785)
chr5 (1-37)||(34382566-34382602)
[»] chr7 (14 HSPs)
chr7 (1-55)||(32724207-32724261)
chr7 (1-55)||(38223951-38224005)
chr7 (8-55)||(2008565-2008612)
chr7 (1-48)||(23156334-23156381)
chr7 (2-140)||(31330280-31330423)
chr7 (1-48)||(37698471-37698518)
chr7 (1-55)||(4958214-4958268)
chr7 (1-55)||(19753055-19753109)
chr7 (1-55)||(48767251-48767305)
chr7 (1-54)||(36656702-36656755)
chr7 (1-37)||(4874960-4874996)
chr7 (1-41)||(5513941-5513981)
chr7 (8-40)||(6068088-6068120)
chr7 (1-37)||(15018373-15018409)
[»] chr1 (8 HSPs)
chr1 (1-55)||(9505577-9505631)
chr1 (8-54)||(40287086-40287132)
chr1 (1-49)||(52353882-52353930)
chr1 (8-55)||(27544348-27544395)
chr1 (1-48)||(43822759-43822806)
chr1 (1-55)||(11241573-11241627)
chr1 (1-35)||(42831641-42831675)
chr1 (8-41)||(35988210-35988243)


Alignment Details
Target: chr8 (Bit Score: 168; Significance: 6e-90; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 11 - 320
Target Start/End: Original strand, 30727760 - 30728073
Alignment:
Q  11 acattttaattttttaatattaaaaaagtgtaggtcccacttaagtgagacctcgggtcttataagaactgaacaacttttctccccaataaaattacct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  30727760 acattttaattttttaatattaaaaaagtgtaggtcccacttaagtgagacctcgggtcttataagacctgaacaacttttctccccaatagaattacct 30727859  T
Q  111 aataaataccaagtcttaaaagtttaagacactctcgttgaaaatgatcatatac-ttttttacaatttgtattttgaatctagcttctt----nnnnnn 205  Q
    |||||||||||||||||||||||||||||||||||| |||||||||  ||||||| ||||||||||||| ||||||||||||||||||||              
T  30727860 aataaataccaagtcttaaaagtttaagacactctcattgaaaatggccatatactttttttacaatttttattttgaatctagcttcttaaaaaaaaaa 30727959  T
Q  206 nnnnnnnnnggagttttttcatatcaggaatcaattacagattcatgcattatgaatcaatatacannnnnnngaggggttgaatcaggacacttgaata 305  Q
              |||||||||||||||| |||||||||||||||||||| |||||||||||||||||        |||||||||||||||||||||| ||||    
T  30727960 aaaaaaaaaagagttttttcatatcaagaatcaattacagattcatgaattatgaatcaatatacttttttttgaggggttgaatcaggacactt-aata 30728058  T
Q  306 caataatattttatc 320  Q
    ||| ||||| |||||    
T  30728059 caacaatatcttatc 30728073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 316 - 387
Target Start/End: Original strand, 30729237 - 30729308
Alignment:
Q  316 ttatcttatcatatttcattgaggaaggttattgtgggacatattttggtgaatttaccgtgggacatatat 387  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30729237 ttatcttatcatatttcattaaggaaggttattgtgggacatattttggtgaatttaccgtgggacatatat 30729308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 12734073 - 12734028
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtc 46  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  12734073 ttatatcattacattttaattttttaatattaaaaaagtgtaggtc 12734028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 9790153 - 9790191
Alignment:
Q  17 taattttttaatattaaaaaagtgtaggtcccacttaag 55  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  9790153 taattttttaatattaaaaaagtgtaggtcccatttaag 9790191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 35973480 - 35973534
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtcccacttaag 55  Q
    |||||| |||| || | ||||||||||||||||||||||||||||||||| ||||    
T  35973480 ttatatcattatatatcaattttttaatattaaaaaagtgtaggtcccacctaag 35973534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 5569258 - 5569205
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtcccacttaag 55  Q
    |||||| ||||||||| |||||||||||||||||||| |||| ||| ||||||||    
T  5569258 ttatatcattacatttgaattttttaatattaaaaaa-tgtaagtctcacttaag 5569205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 8673693 - 8673747
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtcccacttaag 55  Q
    |||||| | |||||||| ||||||||||||||||||||| | ||||||| |||||    
T  8673693 ttatatcactacattttcattttttaatattaaaaaagtttgggtcccatttaag 8673747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 28557276 - 28557222
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtcccacttaag 55  Q
    |||||| ||||||||| |||||||||||||||||| ||||| | |||||| ||||    
T  28557276 ttatattattacatttcaattttttaatattaaaagagtgtggatcccacataag 28557222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 1155239 - 1155288
Alignment:
Q  6 taattacattttaattttttaatattaaaaaagtgtaggtcccacttaag 55  Q
    ||||||||||| |||||||||||||||||| |||||  ||||| ||||||    
T  1155239 taattacatttcaattttttaatattaaaagagtgtgagtcccgcttaag 1155288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 14426226 - 14426267
Alignment:
Q  13 attttaattttttaatattaaaaaagtgtaggtcccacttaa 54  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  14426226 attttaattttttaatattaaaagagtgtggatcccacttaa 14426267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 23982274 - 23982222
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtcccacttaa 54  Q
    |||||| |||| |||| |||||||||||||||||||||||| |||||| |||||    
T  23982274 ttatatcattatatttcaattttttaatattaaaaaagtgt-ggtcccgcttaa 23982222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 36068918 - 36068947
Alignment:
Q  8 attacattttaattttttaatattaaaaaa 37  Q
    ||||||||||||||||||||||||||||||    
T  36068918 attacattttaattttttaatattaaaaaa 36068947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28540701 - 28540661
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgt 41  Q
    |||||| ||||||||| |||||||||||||||||| |||||    
T  28540701 ttatatcattacatttcaattttttaatattaaaagagtgt 28540661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 217 - 359
Target Start/End: Complemental strand, 7733196 - 7733061
Alignment:
Q  217 agttttttcatatcaggaatcaattacagattcatgcattatgaatcaatatacannnnnnngaggggttgaatcaggacacttgaatacaataatattt 316  Q
    |||| |||||||||| |||||||||||| ||||||| |||||||||||||||||         |||||||||||||| |||||||||||||||||         
T  7733196 agttgtttcatatcaagaatcaattacaaattcatg-attatgaatcaatatactttttttt-aggggttgaatcagcacacttgaatacaataa----- 7733104  T
Q  317 tatcttatcatatttcattgaggaaggttattgtgggacatat 359  Q
    ||||||||||||||||||| | |||||||||||| ||||||||    
T  7733103 tatcttatcatatttcattaatgaaggttattgtaggacatat 7733061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 19900225 - 19900276
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtcccactt 52  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  19900225 ttatatcattacattttaattttttaatattaaaaaagtgtagatcccactt 19900276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 33291080 - 33291134
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtcccacttaag 55  Q
    |||||| |||||||||||| ||||| ||||||||| ||||| |||||| ||||||    
T  33291080 ttatatcattacattttaacttttttatattaaaatagtgtgggtcccgcttaag 33291134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 35539593 - 35539540
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtcccacttaa 54  Q
    |||||| |||| |||| || ||||||||||||||||||||  ||||||||||||    
T  35539593 ttatatcattatatttcaactttttaatattaaaaaagtgcgggtcccacttaa 35539540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 41211765 - 41211724
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgta 42  Q
    |||||| ||||| ||| |||||||||||||||||||||||||    
T  41211765 ttatatcattacgtttcaattttttaatattaaaaaagtgta 41211724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 46006171 - 46006216
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtc 46  Q
    |||||| |||| ||||||||||||||||||||||| |||| |||||    
T  46006171 ttatatcattatattttaattttttaatattaaaagagtgcaggtc 46006216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 9491849 - 9491903
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtcccacttaag 55  Q
    |||||| |||||||||||||||||||||||||||||| ||| |||||||||||||    
T  9491849 ttatatcattacattttaattttttaatattaaaaaaatgtgggtcccacttaag 9491903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 7694026 - 7694071
Alignment:
Q  10 tacattttaattttttaatattaaaaaagtgtaggtcccacttaag 55  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||    
T  7694026 tacatttcaattttttaatattaaaaaagtgtaggtccctcttaag 7694071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 25099107 - 25099056
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtcccactt 52  Q
    |||||| |||| |||||||||||||||||||||| |||||| ||||||||||    
T  25099107 ttatatcattatattttaattttttaatattaaacaagtgttggtcccactt 25099056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 3705825 - 3705864
Alignment:
Q  12 cattttaattttttaatattaaaaaagtgtaggtcccact 51  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  3705825 cattttaattttttaatattaaaaaagtgtgggtctcact 3705864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 32977475 - 32977544
Alignment:
Q  10 tacattttaattttttaatattaaaaaagtgtaggtcccacttaa--gtgagacctcgggtcttataaga 77  Q
    ||||||| |||||||||| ||||||| |||| |||||||||||||   || |||| ||||||||||||||    
T  32977475 tacatttcaattttttaacattaaaagagtgcaggtcccacttaaagttgggaccccgggtcttataaga 32977544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 32658531 - 32658572
Alignment:
Q  13 attttaattttttaatattaaaaaagtgtaggtcccacttaa 54  Q
    ||||||||||||||||||||||| ||||| |||||| |||||    
T  32658531 attttaattttttaatattaaaagagtgtgggtcccgcttaa 32658572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6988206 - 6988166
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgt 41  Q
    |||||| || ||||||||||||||||||||||||| |||||    
T  6988206 ttatatcatcacattttaattttttaatattaaaagagtgt 6988166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 30865921 - 30865871
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtcccact 51  Q
    |||||| ||||||||| |||||||||||||||||||||||||||| |||||    
T  30865921 ttatatcattacatttcaattttttaatattaaaaaagtgtaggttccact 30865871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 24030648 - 24030617
Alignment:
Q  8 attacattttaattttttaatattaaaaaagt 39  Q
    ||||||||||||||||||||||||||||||||    
T  24030648 attacattttaattttttaatattaaaaaagt 24030617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 39055192 - 39055157
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaa 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  39055192 ttatatcattacattttaattttttaatattaaaaa 39055157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 10180707 - 10180761
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtcccacttaag 55  Q
    |||||| ||||||| | ||||||||||||||||||| || | |||||||||||||    
T  10180707 ttatatcattacatatcaattttttaatattaaaaaggtatgggtcccacttaag 10180761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 49211057 - 49211023
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaa 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  49211057 ttatatcattacattttaattttttaatattaaaa 49211023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 53779449 - 53779487
Alignment:
Q  3 atataattacattttaattttttaatattaaaaaagtgt 41  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  53779449 atatcattatattttaattttttaatattaaaaaagtgt 53779487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 28509495 - 28509523
Alignment:
Q  9 ttacattttaattttttaatattaaaaaa 37  Q
    |||||||||||||||||||||||||||||    
T  28509495 ttacattttaattttttaatattaaaaaa 28509523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 32887696 - 32887750
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtcccacttaag 55  Q
    |||||| |||||||||||||||||||||||||||| ||||| ||||||| |||||    
T  32887696 ttatattattacattttaattttttaatattaaaagagtgtgggtcccaattaag 32887750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 37074776 - 37074726
Alignment:
Q  5 ataattacattttaattttttaatattaaaaaagtgtaggtcccacttaag 55  Q
    |||||| ||||||||||||||||||||||||||||||  ||| ||||||||    
T  37074776 ataatttcattttaattttttaatattaaaaaagtgtgtgtctcacttaag 37074726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 40999708 - 40999654
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtcccacttaag 55  Q
    |||||| |||| |||| ||| ||||||||||||| |||||| |||||||||||||    
T  40999708 ttatatcattatatttcaatcttttaatattaaacaagtgtgggtcccacttaag 40999654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 28857088 - 28857051
Alignment:
Q  18 aattttttaatattaaaaaagtgtaggtcccacttaag 55  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  28857088 aattttttaatattaaaaaagtgtgggtctcacttaag 28857051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 6459102 - 6459070
Alignment:
Q  8 attacattttaattttttaatattaaaaaagtg 40  Q
    |||| ||||||||||||||||||||||||||||    
T  6459102 attatattttaattttttaatattaaaaaagtg 6459070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 13022818 - 13022854
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaa 37  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  13022818 ttatattattacatttcaattttttaatattaaaaaa 13022854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 22579703 - 22579668
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaa 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  22579703 ttatataattacattttaattttttaatattaaaaa 22579668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6761462 - 6761498
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaa 37  Q
    |||||| ||||||||||||||||||||||||||||||    
T  6761462 ttatatcattacattttaattttttaatattaaaaaa 6761498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 2375578 - 2375539
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtg 40  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  2375578 ttatataattatattttaattttttaatattaaaagagtg 2375539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 3558785 - 3558748
Alignment:
Q  18 aattttttaatattaaaaaagtgtaggtcccacttaag 55  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  3558785 aattttttaatattaaaaaggtgttggtcccacttaag 3558748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34382566 - 34382602
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaa 37  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  34382566 ttatatcattacattttaatattttaatattaaaaaa 34382602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 32724261 - 32724207
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtcccacttaag 55  Q
    |||||| ||||||| | ||||||||||||||||||| |||| |||||||||||||    
T  32724261 ttatatcattacatatcaattttttaatattaaaaaggtgtgggtcccacttaag 32724207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 38224005 - 38223951
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtcccacttaag 55  Q
    |||||| ||||||| | ||||||||||||||||||| |||| |||||||||||||    
T  38224005 ttatatcattacatataaattttttaatattaaaaaggtgtgggtcccacttaag 38223951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 2008612 - 2008565
Alignment:
Q  8 attacattttaattttttaatattaaaaaagtgtaggtcccacttaag 55  Q
    ||||||||| |||||||||||||||||||||| |  ||||||||||||    
T  2008612 attacatttcaattttttaatattaaaaaagtatgtgtcccacttaag 2008565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 23156334 - 23156381
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtccc 48  Q
    |||||| | |||||||||||||||||||||||||| |||| |||||||    
T  23156334 ttatatcactacattttaattttttaatattaaaagagtgcaggtccc 23156381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 31330423 - 31330280
Alignment:
Q  2 tatataattacattttaattttttaatattaaaaaagtgtaggtcccacttaagt-----gagacctcgggtcttataagaactgaacaacttttctccc 96  Q
    ||||| ||||||||| |||||||||||||||||| ||| |  ||| ||||||||      | ||| | ||||||||||||| |  || |||||| |||||    
T  31330423 tatatcattacatttcaattttttaatattaaaatagtatgtgtctcacttaagattggagcgacattgggtcttataagaccccaataactttcctccc 31330324  T
Q  97 caataaaattacctaataaataccaagtcttaaaagtttaagac 140  Q
    || |  |   |||||||| |||||||||||||||||||||||||    
T  31330323 cagtggagacacctaatagataccaagtcttaaaagtttaagac 31330280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 37698518 - 37698471
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtccc 48  Q
    |||||| | |||||||||||||||||||||||||| ||||| ||||||    
T  37698518 ttatatcactacattttaattttttaatattaaaagagtgtgggtccc 37698471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 4958268 - 4958214
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtcccacttaag 55  Q
    |||||| ||||||| | ||||||||||||||||||| |||| | |||||||||||    
T  4958268 ttatatcattacatatcaattttttaatattaaaaaggtgtggatcccacttaag 4958214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 19753055 - 19753109
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtcccacttaag 55  Q
    |||||| ||||||||| ||||||||||| ||||||| |||| |||| ||||||||    
T  19753055 ttatatcattacatttcaattttttaatcttaaaaaggtgtgggtctcacttaag 19753109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 48767251 - 48767305
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtcccacttaag 55  Q
    |||||| ||| ||||| ||||||||| ||||||||||||||  ||||||||||||    
T  48767251 ttatatcattgcatttcaattttttattattaaaaaagtgttagtcccacttaag 48767305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 36656702 - 36656755
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtcccacttaa 54  Q
    |||||| ||||||| | ||||||||||||||||||| |||| |||||| |||||    
T  36656702 ttatatcattacatatcaattttttaatattaaaaaggtgtgggtcccgcttaa 36656755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4874960 - 4874996
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaa 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  4874960 ttatatcattacattttaatttttaaatattaaaaaa 4874996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 5513941 - 5513981
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgt 41  Q
    |||||||||||||||| |||||||| ||||||||| |||||    
T  5513941 ttatataattacatttcaatttttttatattaaaagagtgt 5513981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 6068120 - 6068088
Alignment:
Q  8 attacattttaattttttaatattaaaaaagtg 40  Q
    ||||||||| |||||||||||||||||||||||    
T  6068120 attacatttcaattttttaatattaaaaaagtg 6068088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 15018409 - 15018373
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaa 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  15018409 ttatattattacattttaatttttgaatattaaaaaa 15018373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 9505577 - 9505631
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtcccacttaag 55  Q
    |||||| ||||||| | ||||||||||||||||||| |||| |||||||||||||    
T  9505577 ttatattattacatataaattttttaatattaaaaaggtgtgggtcccacttaag 9505631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 40287086 - 40287132
Alignment:
Q  8 attacattttaattttttaatattaaaaaagtgtaggtcccacttaa 54  Q
    ||||||||||||||||||||||||||||| |||| |||||| |||||    
T  40287086 attacattttaattttttaatattaaaaaggtgtgggtcccgcttaa 40287132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 52353882 - 52353930
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtccca 49  Q
    |||||| ||||||||| |||||||||||||||||||||| | |||||||    
T  52353882 ttatatcattacatttcaattttttaatattaaaaaagtatgggtccca 52353930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 27544395 - 27544348
Alignment:
Q  8 attacattttaattttttaatattaaaaaagtgtaggtcccacttaag 55  Q
    ||||||||| || ||||||||||||||| ||||| |||||||||||||    
T  27544395 attacatttcaactttttaatattaaaagagtgtgggtcccacttaag 27544348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 43822806 - 43822759
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtccc 48  Q
    |||||| | ||||||| |||||||||||||||||| ||||||||||||    
T  43822806 ttatatcactacatttcaattttttaatattaaaagagtgtaggtccc 43822759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 11241573 - 11241627
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaaaagtgtaggtcccacttaag 55  Q
    |||||| |||| |||| |||||| ||||||||||||||||| | |||||||||||    
T  11241573 ttatatcattatatttcaattttataatattaaaaaagtgtggatcccacttaag 11241627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 42831675 - 42831641
Alignment:
Q  1 ttatataattacattttaattttttaatattaaaa 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  42831675 ttatatcattacattttaattttttaatattaaaa 42831641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 35988243 - 35988210
Alignment:
Q  8 attacattttaattttttaatattaaaaaagtgt 41  Q
    |||||||||||||||||||||||| |||||||||    
T  35988243 attacattttaattttttaatatttaaaaagtgt 35988210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University