View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14506_low_21 (Length: 369)
Name: NF14506_low_21
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 4 - 351
Target Start/End: Complemental strand, 45616934 - 45616586
Alignment:
| Q |
4 |
cagagatgaatgaattgaaaaggactaatagaaagtcacttt-ctgtttggagggaccattacactccttctgcaaacaactgaggggtgagacagaaca |
102 |
Q |
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| T |
45616934 |
cagaaatgaatgaattgaaaaggactaatagaaagtcacttttctgtttggagggaccattacactccttctgcaaacaactgagggatgagacagaaca |
45616835 |
T |
|
| Q |
103 |
ggaagaccccattgagtaggtagaacaataactggataactgttttccatgttcataattttgttcacaatatcattgtagattcttacaattctagttg |
202 |
Q |
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| T |
45616834 |
ggaagaccccattgagtaggtagaacaataactggataactgttttccatgttcataattttgttcacaatatcattgtagattcttacaattctagttg |
45616735 |
T |
|
| Q |
203 |
aaaagagcattgtagagaaaaacttcctagaacgtgataaccttagaccacgtagttttccattcaaagacttcacccaaatgcaacgttttcctactct |
302 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45616734 |
aatagagcattgtagagaaaaacttcctagaacgtgataaccttagaccacgtagttttccattcaaagacttcacccaaatgcaacgttttcctactct |
45616635 |
T |
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| Q |
303 |
catcatccttttacttgttaacttttcatagccaaatctcatgcgtttg |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45616634 |
catcatccttttacttgttaacttttcatagccaaatctcatgcgtttg |
45616586 |
T |
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