View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14506_low_23 (Length: 364)

Name: NF14506_low_23
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14506_low_23
NF14506_low_23
[»] chr1 (5 HSPs)
chr1 (18-364)||(48982665-48983023)
chr1 (191-312)||(21182964-21183085)
chr1 (202-312)||(14321030-14321140)
chr1 (186-268)||(1656752-1656834)
chr1 (202-312)||(24084142-24084252)
[»] chr3 (6 HSPs)
chr3 (191-301)||(37288650-37288759)
chr3 (194-309)||(53256578-53256693)
chr3 (191-277)||(8557612-8557698)
chr3 (199-250)||(11083274-11083323)
chr3 (202-299)||(34809154-34809251)
chr3 (233-278)||(37509267-37509312)
[»] chr6 (4 HSPs)
chr6 (191-273)||(2660349-2660431)
chr6 (191-276)||(31238355-31238440)
chr6 (191-276)||(31247725-31247810)
chr6 (186-270)||(9062845-9062929)
[»] chr5 (1 HSPs)
chr5 (191-315)||(32565918-32566042)
[»] chr4 (8 HSPs)
chr4 (196-302)||(11777164-11777271)
chr4 (186-270)||(52708486-52708570)
chr4 (186-270)||(779775-779860)
chr4 (191-276)||(10519582-10519667)
chr4 (191-240)||(43525649-43525698)
chr4 (191-312)||(53920190-53920311)
chr4 (219-267)||(16467873-16467921)
chr4 (213-301)||(53599339-53599427)
[»] chr8 (5 HSPs)
chr8 (191-309)||(4305325-4305442)
chr8 (191-283)||(7671716-7671807)
chr8 (197-276)||(32668106-32668185)
chr8 (200-277)||(26040143-26040220)
chr8 (263-310)||(43623599-43623646)
[»] chr2 (6 HSPs)
chr2 (200-299)||(33500081-33500180)
chr2 (190-243)||(26296836-26296889)
chr2 (191-244)||(42491804-42491857)
chr2 (213-312)||(5963946-5964045)
chr2 (190-314)||(8257222-8257348)
chr2 (186-250)||(37807297-37807361)
[»] chr7 (4 HSPs)
chr7 (200-278)||(31211884-31211962)
chr7 (191-276)||(41750647-41750732)
chr7 (199-303)||(10701648-10701753)
chr7 (218-312)||(41750468-41750562)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 48982665 - 48983023
Alignment:
Q  18 actctagatgttaatgatttggataatgatgtaacacacaacgtagtaaattgatttgtttgatctatgtagtcagtcgtccatacttatggtgataata 117  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    ||||||||||||||| ||||||    
T  48982665 actctagatgttaatgatttggataatgatgtaacacagaacgtaataaattgatttgtttgatctatgtagtc----gtccatacttatggtaataata 48982760  T
Q  118 cttggttattatttctttttcnnnnnnnnntactcggttattgttgtaatgaatnnnnnnngtattgaaatgattaagaaagttaaaaatagaaattttc 217  Q
    || ||||||||||||||| ||         ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  48982761 ctgggttattatttctttctcaaaaaaaaatactcggttattgttgtaatgaataaaaaaagtattgaaatgattaagaaagttaaaaatagaaattttc 48982860  T
Q  218 tattaaaagcaataacttttttacttttataaaacgaaacattcaacttttcatcatttcttaatataaaatttttatattaatctattta--------- 308  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||             
T  48982861 tattaaaaacaataacttttttacttttataaaacgaaacattcaacttttcatcattttttaatgtaaaatttctatattaatctctttagttgatgtc 48982960  T
Q  309 -------actatttaacattttcctataaaaaataagcaatattattatcgtaatttcttgac 364  Q
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48982961 ctggagtactatttaacatttttctataaaaaataagcaatattattatcgtaatttcttgac 48983023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 312
Target Start/End: Original strand, 21182964 - 21183085
Alignment:
Q  191 ttaagaaagttaaaaatagaaattttctattaaaagcaataacttttttacttttataaaacgaaacattcaacttttcatcatttcttaatataaaatt 290  Q
    |||||||||||||||||| |||| || |||||||  ||| |||||||| |||||| ||||  | ||||||| | |||||||||||||  |||  ||| ||    
T  21182964 ttaagaaagttaaaaatataaatcttttattaaagacaacaactttttgacttttctaaagtggaacattccatttttcatcatttcccaatgcaaagtt 21183063  T
Q  291 tttatattaatctatttaacta 312  Q
    || ||||||||||  |||||||    
T  21183064 ttcatattaatcttcttaacta 21183085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 312
Target Start/End: Original strand, 14321030 - 14321140
Alignment:
Q  202 aaaaatagaaattttctattaaaagcaataacttttttacttttataaaacgaaacattcaacttttcatcatttcttaatataaaatttttatattaat 301  Q
    ||||||||||| |||  ||||||| ||| |||||||||||||| ||||||  |||||||  ||||||||||| || | |||  | ||||| |||||||||    
T  14321030 aaaaatagaaaattttcattaaaaacaacaacttttttactttcataaaattaaacattttacttttcatcaattttcaatgcataatttctatattaat 14321129  T
Q  302 ctatttaacta 312  Q
    ||  |||||||    
T  14321130 cttcttaacta 14321140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 268
Target Start/End: Original strand, 1656752 - 1656834
Alignment:
Q  186 aatgattaagaaagttaaaaatagaaattttctattaaaagcaataacttttttacttttataaaacgaaacattcaactttt 268  Q
    ||||| |||| | ||||||||||||||  || |||||||| ||| | ||||||||||||||||||   |||||||| ||||||    
T  1656752 aatgactaaggatgttaaaaatagaaaaattttattaaaaacaacaccttttttacttttataaatttaaacattccactttt 1656834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 312
Target Start/End: Complemental strand, 24084252 - 24084142
Alignment:
Q  202 aaaaatagaaattttctattaaaagcaataacttttttacttttataaaacgaaacattcaacttttcatcatttcttaatataaaatttttatattaat 301  Q
    ||||||||||| |||  || |||| ||| || ||||| ||||| |||||   |||||||| |||||| |||| || | |||| | |||||||||||||||    
T  24084252 aaaaatagaaaattttcatcaaaaacaacaattttttgactttcataaagttaaacattccactttttatcaattttcaatacataatttttatattaat 24084153  T
Q  302 ctatttaacta 312  Q
    || ||||||||    
T  24084152 ctttttaacta 24084142  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 191 - 301
Target Start/End: Complemental strand, 37288759 - 37288650
Alignment:
Q  191 ttaagaaagttaaaaatagaaattttctattaaaagcaataacttttttacttttataaaacgaaacattcaacttttcatcatttcttaatataaaatt 290  Q
    |||| |||||||||||||||| |||| |||||||  | |||||||||| |||||| ||||| | |||||||||||||||||||||| | |||| ||||||    
T  37288759 ttaaaaaagttaaaaatagaattttt-tattaaagacgataactttttgacttttttaaaatggaacattcaacttttcatcatttttcaatacaaaatt 37288661  T
Q  291 tttatattaat 301  Q
    |||||||||||    
T  37288660 tttatattaat 37288650  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 309
Target Start/End: Original strand, 53256578 - 53256693
Alignment:
Q  194 agaaagttaaaaatagaaattttctattaaaagcaataacttttttacttttataaaacgaaacattcaacttttcatcatttcttaatataaaattttt 293  Q
    |||||||||||| |||||||||| |||||||| |||||| ||||| ||||| |||||  ||||||||  |||||| |||| || |||||  |||||||      
T  53256578 agaaagttaaaagtagaaattttatattaaaaacaataattttttgactttcataaattgaaacattttactttttatcactttttaatgcaaaatttcc 53256677  T
Q  294 atattaatctatttaa 309  Q
    || ||||||| |||||    
T  53256678 attttaatctctttaa 53256693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 191 - 277
Target Start/End: Complemental strand, 8557698 - 8557612
Alignment:
Q  191 ttaagaaagttaaaaatagaaattttctattaaaagcaataacttttttacttttataaaacgaaacattcaacttttcatcatttc 277  Q
    |||||||||||| ||||||||| ||| |||||||  ||| ||||| || |||||| ||||  ||||||||| |||||||||||||||    
T  8557698 ttaagaaagttagaaatagaaactttttattaaagacaacaacttattgacttttctaaagtgaaacattccacttttcatcatttc 8557612  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 11083323 - 11083274
Alignment:
Q  199 gttaaaaatagaaattttctattaaaagcaataacttttttacttttataaa 250  Q
    |||||||||||||||||| |||||||| |||||| |||||||||||||||||    
T  11083323 gttaaaaatagaaatttt-tattaaaaacaataa-ttttttacttttataaa 11083274  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 299
Target Start/End: Complemental strand, 34809251 - 34809154
Alignment:
Q  202 aaaaatagaaattttctattaaaagcaataacttttttacttttataaaacgaaacattcaacttttcatcatttcttaatataaaatttttatatta 299  Q
    |||||||||  |||| |||||||||||| || ||||| ||||| |||||   |||||||| |||||||| ||||||| |||  ||| ||| |||||||    
T  34809251 aaaaatagattttttttattaaaagcaacaattttttgactttcataaagttaaacattctacttttcaccatttctcaatgcaaagtttctatatta 34809154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 37509267 - 37509312
Alignment:
Q  233 cttttttacttttataaaacgaaacattcaacttttcatcatttct 278  Q
    |||||| |||||| ||||| ||||||||| ||||||||||||||||    
T  37509267 ctttttgacttttctaaaatgaaacattccacttttcatcatttct 37509312  T

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Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 191 - 273
Target Start/End: Complemental strand, 2660431 - 2660349
Alignment:
Q  191 ttaagaaagttaaaaatagaaattttctattaaaagcaataacttttttacttttataaaacgaaacattcaacttttcatca 273  Q
    |||| ||||||||||||||| |||||||||||||| ||| |||||||| |||||||||||  ||||| ||| |||||||||||    
T  2660431 ttaaaaaagttaaaaatagatattttctattaaaaacaacaactttttaacttttataaagtgaaacgttctacttttcatca 2660349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 191 - 276
Target Start/End: Complemental strand, 31238440 - 31238355
Alignment:
Q  191 ttaagaaagttaaaaatagaaattttctattaaaagcaataacttttttacttttataaaacgaaacattcaacttttcatcattt 276  Q
    ||||||||||||||||||||| ||||| ||||||| ||| |||||||| |||||||||||  | ||||||  ||||||||||||||    
T  31238440 ttaagaaagttaaaaatagaatttttccattaaaaacaacaactttttgacttttataaagtggaacatttcacttttcatcattt 31238355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 191 - 276
Target Start/End: Complemental strand, 31247810 - 31247725
Alignment:
Q  191 ttaagaaagttaaaaatagaaattttctattaaaagcaataacttttttacttttataaaacgaaacattcaacttttcatcattt 276  Q
    ||||||||||| ||||||||||||||| ||||||| ||| |||||||| |||||||||||  | ||||||  ||||||||||||||    
T  31247810 ttaagaaagtttaaaatagaaattttccattaaaaacaacaactttttgacttttataaagtggaacatttcacttttcatcattt 31247725  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 270
Target Start/End: Original strand, 9062845 - 9062929
Alignment:
Q  186 aatgattaagaaagttaaaaatagaaattttctattaaaagcaataacttttttacttttataaaacgaaacattcaacttttca 270  Q
    |||||||||| | || ||||||||||| |||  ||||||| ||| ||||||||  |||| |||||   |||||||||||||||||    
T  9062845 aatgattaaggatgtcaaaaatagaaaattttcattaaaaacaacaactttttatctttcataaagttaaacattcaacttttca 9062929  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 315
Target Start/End: Original strand, 32565918 - 32566042
Alignment:
Q  191 ttaagaaagttaaaaatagaaattttctattaaaagcaataacttttttacttttataaaacgaaacattcaacttttcatcatttcttaatataaaatt 290  Q
    |||||||||||||||||||||| |||| ||||||| ||||||  |||| |||||||||||    || |||| ||||||||||| ||   ||| |||||||    
T  32565918 ttaagaaagttaaaaatagaaaatttccattaaaaacaataaacttttgacttttataaactcgaatattccacttttcatcactttccaatgtaaaatt 32566017  T
Q  291 tttatattaatctatttaactattt 315  Q
    ||||||||| |||  ||||||||||    
T  32566018 tttatattagtctccttaactattt 32566042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 196 - 302
Target Start/End: Complemental strand, 11777271 - 11777164
Alignment:
Q  196 aaagttaaaaatagaaattttct-attaaaagcaataacttttttacttttataaaacgaaacattcaacttttcatcatttcttaatataaaattttta 294  Q
    ||||||||||||| ||||||| | ||||||  ||| | ||||||||||||||||||| ||||||||||||||||| ||||||  ||||  || |||| ||    
T  11777271 aaagttaaaaatataaatttttttattaaacacaacatcttttttacttttataaaatgaaacattcaacttttcgtcattttctaatgcaagatttcta 11777172  T
Q  295 tattaatc 302  Q
    ||||||||    
T  11777171 tattaatc 11777164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 186 - 270
Target Start/End: Original strand, 52708486 - 52708570
Alignment:
Q  186 aatgattaagaaagttaaaaatagaaattttctattaaaagcaataacttttttacttttataaaacgaaacattcaacttttca 270  Q
    |||| ||||| | |||||||| ||||||||| |||||||| ||| |||||||| ||||| |||||   |||||||||||||||||    
T  52708486 aatggttaaggatgttaaaaagagaaattttttattaaaaacaacaactttttgactttcataaagttaaacattcaacttttca 52708570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 270
Target Start/End: Complemental strand, 779860 - 779775
Alignment:
Q  186 aatgattaagaaagttaaaaatagaaattttctattaaaagcaataactttttt-acttttataaaacgaaacattcaacttttca 270  Q
    |||||||||||| || ||||||||||| |||  ||||||| ||| ||||||||| ||||| |||||   |||||||||||||||||    
T  779860 aatgattaagaatgtcaaaaatagaaaattttcattaaaaacaacaacttttttgactttcataaagttaaacattcaacttttca 779775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 276
Target Start/End: Complemental strand, 10519667 - 10519582
Alignment:
Q  191 ttaagaaagttaaaaatagaaattttctattaaaagcaataacttttttacttttataaaacgaaacattcaacttttcatcattt 276  Q
    |||||||||||| |||||||  |||| |||||||  |||||||||||| |||||| ||||  | ||||||| |||||| |||||||    
T  10519667 ttaagaaagttagaaatagattttttttattaaagacaataactttttgacttttctaaagtggaacattccacttttaatcattt 10519582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 43525698 - 43525649
Alignment:
Q  191 ttaagaaagttaaaaatagaaattttctattaaaagcaataactttttta 240  Q
    |||||||||| |||| || |||||||||||||||| ||||||||||||||    
T  43525698 ttaagaaagtcaaaattaaaaattttctattaaaaacaataactttttta 43525649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 312
Target Start/End: Original strand, 53920190 - 53920311
Alignment:
Q  191 ttaagaaagttaaaaatagaaattttctattaaaagcaataacttttttacttttataaaacgaaacattcaacttttcatcatttcttaatataaaatt 290  Q
    |||||||||||||| ||| |||||||  ||||||  ||| |||||||| |||||| ||||  ||||||||| |||| |||| ||||   ||| |||| ||    
T  53920190 ttaagaaagttaaatatataaatttttcattaaagacaacaactttttgacttttctaaagtgaaacattccacttctcattattttccaatgtaaagtt 53920289  T
Q  291 tttatattaatctatttaacta 312  Q
    || ||||||||||  |||||||    
T  53920290 ttcatattaatctccttaacta 53920311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 16467873 - 16467921
Alignment:
Q  219 attaaaagcaataacttttttacttttataaaacgaaacattcaacttt 267  Q
    ||||||| |||||||||||||||||| |||||   ||||||||||||||    
T  16467873 attaaaaacaataacttttttactttcataaagttaaacattcaacttt 16467921  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 301
Target Start/End: Complemental strand, 53599427 - 53599339
Alignment:
Q  213 ttttctattaaaagcaataacttttttacttttataaaacgaaacattcaacttttcatcatttcttaatataaaatttttatattaat 301  Q
    |||| |||||||| |||||||||||||||||| |||||   |||||||  | ||||||||| ||  |||| || ||||| |||||||||    
T  53599427 ttttttattaaaaacaataacttttttactttcataaagttaaacattacatttttcatcaatttctaatgtataatttctatattaat 53599339  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 309
Target Start/End: Original strand, 4305325 - 4305442
Alignment:
Q  191 ttaagaaagttaaaaatagaaattttctattaaaagcaataacttttttacttttataaaacgaaacattcaacttttcatcatttcttaatataaaatt 290  Q
    ||||||||||||||||||||| |||| |||||||| | | |  ||||||||||| |||||    ||||||  ||||||||||||||  |||| |||||||    
T  4305325 ttaagaaagttaaaaatagaatttttttattaaaa-cgacattttttttactttcataaagtagaacattttacttttcatcattttctaatgtaaaatt 4305423  T
Q  291 tttatattaatctatttaa 309  Q
    ||||||||||||| |||||    
T  4305424 tttatattaatctctttaa 4305442  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 191 - 283
Target Start/End: Complemental strand, 7671807 - 7671716
Alignment:
Q  191 ttaagaaagttaaaaatagaaattttctattaaaagcaataacttttttacttttataaaacgaaacattcaacttttcatcatttcttaata 283  Q
    |||||||||||||||||| | ||||| |||||||| ||| |||||||| |||||| ||||| | ||||||  ||||||||| |||| ||||||    
T  7671807 ttaagaaagttaaaaataaatatttt-tattaaaaacaacaactttttgacttttttaaaatggaacattttacttttcattattttttaata 7671716  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 276
Target Start/End: Original strand, 32668106 - 32668185
Alignment:
Q  197 aagttaaaaatagaaattttctattaaaagcaataacttttttacttttataaaacgaaacattcaacttttcatcattt 276  Q
    ||||||||||||| || |||  ||||||| ||| || ||||| |||||||||||| ||||||||| |||||| |||||||    
T  32668106 aagttaaaaataggaagttttcattaaaaacaacaaatttttgacttttataaaatgaaacattccacttttaatcattt 32668185  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 277
Target Start/End: Complemental strand, 26040220 - 26040143
Alignment:
Q  200 ttaaaaatagaaattttctattaaaagcaataacttttttacttttataaaacgaaacattcaacttttcatcatttc 277  Q
    ||||||||||||||| || ||| ||| ||| |||||||  ||||| |||||| ||||| ||| |||||||||||||||    
T  26040220 ttaaaaatagaaattctccattcaaaacaacaacttttcgactttcataaaatgaaactttccacttttcatcatttc 26040143  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 43623599 - 43623646
Alignment:
Q  263 acttttcatcatttcttaatataaaatttttatattaatctatttaac 310  Q
    |||||||||||||| ||||| |||| ||||||||||||||| ||||||    
T  43623599 acttttcatcattttttaatgtaaagtttttatattaatctttttaac 43623646  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 299
Target Start/End: Original strand, 33500081 - 33500180
Alignment:
Q  200 ttaaaaatagaaattttctattaaaagcaataacttttttacttttataaaacgaaacattcaacttttcatcatttcttaatataaaatttttatatta 299  Q
    |||||| || ||| |||||||||||| | | |||||||| ||||||||||   ||||||||| ||||||||||| ||  ||||| ||||||| |||||||    
T  33500081 ttaaaattaaaaaatttctattaaaaacgacaactttttaacttttataaggtgaaacattccacttttcatcactttctaatacaaaatttctatatta 33500180  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 26296836 - 26296889
Alignment:
Q  190 attaagaaagttaaaaatagaaattttctattaaaagcaataacttttttactt 243  Q
    ||||||||||||||||||| |||||||| ||||||  |||||||||||| ||||    
T  26296836 attaagaaagttaaaaataaaaattttcaattaaatacaataactttttgactt 26296889  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 42491804 - 42491857
Alignment:
Q  191 ttaagaaagttaaaaatagaaattttctattaaaagcaataacttttttacttt 244  Q
    |||||||||||||||| ||||||||| |||||||| ||| |||||||| |||||    
T  42491804 ttaagaaagttaaaaaaagaaattttttattaaaaacaaaaactttttaacttt 42491857  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 312
Target Start/End: Complemental strand, 5964045 - 5963946
Alignment:
Q  213 ttttctattaaaagcaataacttttttacttttataaaacgaaacattcaacttttcatcatttcttaatataaaatttttatattaatctatttaacta 312  Q
    |||| ||||| || |||||| ||||| ||||| ||||||  ||| |||| ||||||||||| || | |||  | ||||||||||||||||| ||||||||    
T  5964045 ttttttattataaacaataattttttaactttcataaaattaaatattccacttttcatcaattttcaatgcataatttttatattaatctttttaacta 5963946  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 314
Target Start/End: Original strand, 8257222 - 8257348
Alignment:
Q  190 attaagaaagttaaaaatagaaattttct--attaaaagcaataacttttttacttttataaaacgaaacattcaacttttcatcatttcttaatataaa 287  Q
    |||||||||||||||||||||  |||| |  ||||||  ||| |||||||| |||||| ||||  | ||||||| | |||||||||||||  |||  |||    
T  8257222 attaagaaagttaaaaatagattttttttttattaaagacaacaactttttgacttttctaaagtggaacattccatttttcatcatttcccaatgcaaa 8257321  T
Q  288 atttttatattaatctatttaactatt 314  Q
     ||| |||||||||||  |||||||||    
T  8257322 gtttctatattaatctccttaactatt 8257348  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 37807361 - 37807297
Alignment:
Q  186 aatgattaagaaagttaaaaatagaaattttctattaaaagcaataacttttttacttttataaa 250  Q
    |||||||||| |  ||||||||||||||||| |||||||| ||| | |||||| ||||| |||||    
T  37807361 aatgattaaggatattaaaaatagaaattttttattaaaaacaacacctttttgactttcataaa 37807297  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 278
Target Start/End: Original strand, 31211884 - 31211962
Alignment:
Q  200 ttaaaaatagaaattttctattaaaagcaataacttttttacttttataaaacgaaacattcaacttttcatcatttct 278  Q
    ||||||||||||| ||| |||||||  ||| |||||||| |||||||| ||  | ||||||| ||||||||||||||||    
T  31211884 ttaaaaatagaaactttttattaaagacaacaactttttgacttttatgaagtggaacattccacttttcatcatttct 31211962  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 276
Target Start/End: Original strand, 41750647 - 41750732
Alignment:
Q  191 ttaagaaagttaaaaatagaaattttctattaaaagcaataacttttttacttttataaaacgaaacattcaacttttcatcattt 276  Q
    ||||||||| || ||||| || |||| |||||||  |||||| ||||| |||||| ||||  ||||||||| ||||||||||||||    
T  41750647 ttaagaaagctagaaatataatttttttattaaagacaataattttttgacttttctaaagtgaaacattccacttttcatcattt 41750732  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 10701753 - 10701648
Alignment:
Q  199 gttaaaaatagaaatttt-ctattaaaagcaataacttttttacttttataaaacgaaacattcaacttttca-tcatttcttaatataaaatttttata 296  Q
    |||||||||||||||||| | ||||||| ||   | ||||| |||||||||||   ||||||||||||||||| | ||||| ||||||| ||||| ||||    
T  10701753 gttaaaaatagaaatttttccattaaaaacatcgattttttgacttttataaacttaaacattcaacttttcactaatttc-taatatataatttctata 10701655  T
Q  297 ttaatct 303  Q
    |||||||    
T  10701654 ttaatct 10701648  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 312
Target Start/End: Original strand, 41750468 - 41750562
Alignment:
Q  218 tattaaaagcaataacttttttacttttataaaacgaaacattcaacttttcatcatttcttaatataaaatttttatattaatctatttaacta 312  Q
    |||||||| ||| |||||||| ||||||||| |  | |||| || ||||||||||||||||||||  ||| ||||  |||||||||  |||||||    
T  41750468 tattaaaaacaacaactttttgacttttatacagtggaacactccacttttcatcatttcttaatgcaaagttttcttattaatctccttaacta 41750562  T

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