View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14506_low_24 (Length: 359)
Name: NF14506_low_24
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 8019046 - 8019325
Alignment:
| Q |
17 |
atgcaaacaagaaatatgcagcttcaatgaagagtcaaccttgtactcgatagacaactcagcctcaactgaagcattcaacataacattcataccttca |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8019046 |
atgcaaacaagaaatatgcaacttcaatgaagagtcaaccttgtgctcgatagacagctcagcctcaactgaaacattcaacataacattcataccttca |
8019145 |
T |
|
| Q |
117 |
aaacaccaatnnnnnnnnnnnncaataagaaattatcgtcttggtgcaacctcatctcaatttaaattcatcggttagattaccatttactaataccaaa |
216 |
Q |
| |
|
||||||| || ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8019146 |
aaacaccgataaaaaacaaaaacaataagaaatgatcgtcttgctgcaacctcatctcaatttaaattcatcggttagattaccatttactaataccgaa |
8019245 |
T |
|
| Q |
217 |
attgatgccaaagtaacgtacatcatagtccatcttctccataagactacgaaattcattttggacatgaccacatccaa |
296 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8019246 |
attgatgccgaagtaacatacatcatagtccatcttctccataagactacgaaattcattttggacatgaccacatccaa |
8019325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 290 - 343
Target Start/End: Original strand, 8019349 - 8019402
Alignment:
| Q |
290 |
catccaatatttgcctccctttaacgatcgacaatcaacttcaatctggttgct |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8019349 |
catccaatatttgcctccctttaacgatcgacaatcaacttcaatctggttgct |
8019402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University