View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14506_low_26 (Length: 343)

Name: NF14506_low_26
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14506_low_26
NF14506_low_26
[»] chr3 (1 HSPs)
chr3 (90-335)||(1153009-1153256)
[»] chr1 (3 HSPs)
chr1 (140-332)||(10417842-10418035)
chr1 (140-332)||(10412119-10412312)
chr1 (145-301)||(10421790-10421947)
[»] chr8 (1 HSPs)
chr8 (134-332)||(13563203-13563402)
[»] chr5 (6 HSPs)
chr5 (140-332)||(35364705-35364898)
chr5 (111-332)||(35404397-35404619)
chr5 (134-332)||(35752656-35752855)
chr5 (145-330)||(35374256-35374442)
chr5 (140-332)||(35421513-35421706)
chr5 (140-332)||(35434858-35435051)
[»] chr2 (4 HSPs)
chr2 (134-332)||(30633132-30633331)
chr2 (134-332)||(30660861-30661060)
chr2 (134-332)||(30669541-30669740)
chr2 (163-332)||(30631057-30631226)
[»] chr7 (1 HSPs)
chr7 (118-260)||(29625337-29625480)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 90 - 335
Target Start/End: Original strand, 1153009 - 1153256
Alignment:
Q  90 catgctactagtaaccgttgttctctctgagttcagacacggacaagctagctttgcttgctttgaagaaaaa-cttacaaatggcgtgcctgattttct 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  1153009 catgctactagtaaccgttgttctctctgagttcagacacggacaagctagctttgcttgctttgaagaaaaaacttacaaatggcgtgcctgattctct 1153108  T
Q  189 gccgtcatggaatgagtctctacatttttgtaaatggcaaggggttaaatgtggtc-gtgctcacatgagagtctctatcttgcatttggagaatcaaac 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1153109 gccgtcatggaatgagtctctacatttttgtaaatggcaaggggttaaatgtggtcagtgctcacatgagagtctctatcttgcatttggagaatcaaac 1153208  T
Q  288 ctggggtggtactcttgaacgagccttgggaaatctaacatttctaac 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1153209 ctggggtggtactcttgaacgagccttgggaaatctaacatttctaac 1153256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 8e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 140 - 332
Target Start/End: Complemental strand, 10418035 - 10417842
Alignment:
Q  140 gctttgcttgctttgaagaaaaa-cttacaaatggcgtgcctgattttctgccgtcatggaatgagtctctacatttttgtaaatggcaaggggttaaat 238  Q
    |||||||||||||||||| |||| ||||||||||| || || |||| | |||| |||| |||||||||||||||||| ||| | ||||||||| ||| ||    
T  10418035 gctttgcttgctttgaaggaaaagcttacaaatggtgtaccagattctttgccatcatagaatgagtctctacatttctgtgattggcaagggattagat 10417936  T
Q  239 gtggtcgtgctcacatgagagtctctatcttgcatttggagaatcaaacctggggtggtactcttgaacgagccttgggaaatctaacatttct 332  Q
    ||||||||  ||||||||||||||||  |||||||||||| |||||||| | |||||||||||||| || | ||||||||||||||||||||||    
T  10417935 gtggtcgtcgtcacatgagagtctcttccttgcatttggaaaatcaaacattgggtggtactcttggaccatccttgggaaatctaacatttct 10417842  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 140 - 332
Target Start/End: Complemental strand, 10412312 - 10412119
Alignment:
Q  140 gctttgcttgctttgaagaaaaa-cttacaaatggcgtgcctgattttctgccgtcatggaatgagtctctacatttttgtaaatggcaaggggttaaat 238  Q
    |||||||||||||||||| |||| ||||||||||| || |  |||| | |||| ||||||||||||||||||||||| ||| ||||||| || ||| |||    
T  10412312 gctttgcttgctttgaaggaaaagcttacaaatggtgtacaagattctttgccatcatggaatgagtctctacatttctgtgaatggcagggagttgaat 10412213  T
Q  239 gtggtcgtgctcacatgagagtctctatcttgcatttggagaatcaaacctggggtggtactcttgaacgagccttgggaaatctaacatttct 332  Q
    | ||||||   ||||||||||| ||| ||||||||||||| ||||||| || |||||||||||||| || | ||||||||||||||||||||||    
T  10412212 gcggtcgtcgacacatgagagtttctgtcttgcatttggaaaatcaaaacttgggtggtactcttggaccatccttgggaaatctaacatttct 10412119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 301
Target Start/End: Complemental strand, 10421947 - 10421790
Alignment:
Q  145 gcttgctttgaa-gaaaaacttacaaatggcgtgcctgattttctgccgtcatggaatgagtctctacatttttgtaaatggcaaggggttaaatgtggt 243  Q
    |||||||||||| ||||  ||||||||||| || || |||| | |||| |||||||||||||||||| |||| ||| | ||||| ||| ||| |||||||    
T  10421947 gcttgctttgaaagaaacgcttacaaatggtgtaccagattctttgccatcatggaatgagtctctatatttctgtgagtggcaggggattacatgtggt 10421848  T
Q  244 cgtgctcacatgagagtctctatcttgcatttggagaatcaaacctggggtggtactc 301  Q
     ||  |||||||||||||  |   |||||||| ||||||||||| | |||||||||||    
T  10421847 agtcgtcacatgagagtcatttctttgcatttcgagaatcaaacattgggtggtactc 10421790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 134 - 332
Target Start/End: Original strand, 13563203 - 13563402
Alignment:
Q  134 aagctagctttgcttgctttgaagaaaaa-cttacaaatggcgtgcctgattttctgccgtcatggaatgagtctctacatttttgtaaatggcaagggg 232  Q
    ||||||||||||||||||||| || |||| ||||||||||||||||| |||| ||| || ||||||||||||||||||||||| ||| ||||||| ||||    
T  13563203 aagctagctttgcttgctttgtaggaaaagcttacaaatggcgtgcccgattctctaccatcatggaatgagtctctacatttctgtgaatggcaggggg 13563302  T
Q  233 ttaaatgtggtcgtgctcacatgagagtctctatcttgcatttggagaatcaaacctggggtggtactcttgaacgagccttgggaaatctaacatttct 332  Q
    ||| ||||||| ||  ||||||| ||||||||  |||||||||| |||||||||| ||||||| |||| ||| || | ||||||||||| |||| |||||    
T  13563303 ttacatgtggtggtcgtcacatgcgagtctctgccttgcatttgaagaatcaaacatggggtgctacttttggaccatccttgggaaatttaacctttct 13563402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 140 - 332
Target Start/End: Original strand, 35364705 - 35364898
Alignment:
Q  140 gctttgcttgctttgaa-gaaaaacttacaaatggcgtgcctgattttctgccgtcatggaatgagtctctacatttttgtaaatggcaaggggttaaat 238  Q
    ||||||||||||||||| ||||| ||||||||||| ||| |||||| |||||| ||||||||||||||||||||||| ||| ||||||||||| ||| ||    
T  35364705 gctttgcttgctttgaaagaaaagcttacaaatggtgtgtctgattctctgccatcatggaatgagtctctacatttctgtgaatggcaagggattacat 35364804  T
Q  239 gtggtcgtgctcacatgagagtctctatcttgcatttggagaatcaaacctggggtggtactcttgaacgagccttgggaaatctaacatttct 332  Q
    ||||||||  |||||||||||||  |   |||||||||||||||||||  | |||||||||||| | || | | ||||||||||||||||||||    
T  35364805 gtggtcgtcgtcacatgagagtcatttctttgcatttggagaatcaaatattgggtggtactctcggaccatcattgggaaatctaacatttct 35364898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 111 - 332
Target Start/End: Original strand, 35404397 - 35404619
Alignment:
Q  111 tctctctgagttcagacacggacaagctagctttgcttgctttgaagaaaaa-cttacaaatggcgtgcctgattttctgccgtcatggaatgagtctct 209  Q
    ||||| |||||||| | || || ||||| ||||||||||| |||||| |||| ||||||||||| || || |||| | |||| ||||||||| |||||||    
T  35404397 tctctttgagttcaaagactgataagctggctttgcttgcattgaaggaaaagcttacaaatggtgtaccagattctttgccatcatggaataagtctct 35404496  T
Q  210 acatttttgtaaatggcaaggggttaaatgtggtcgtgctcacatgagagtctctatcttgcatttggagaatcaaacctggggtggtactcttgaacga 309  Q
    |||||||||| ||||||||||| ||| ||||||||||  ||||| ||||||||||  ||||| |||||| |||||||| | |||||| ||||||| || |    
T  35404497 acatttttgtgaatggcaagggattacatgtggtcgtcatcacacgagagtctctgccttgcgtttggaaaatcaaacattgggtggcactcttggacca 35404596  T
Q  310 gccttgggaaatctaacatttct 332  Q
     | |||||||||||||| |||||    
T  35404597 tcattgggaaatctaacctttct 35404619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 134 - 332
Target Start/End: Original strand, 35752656 - 35752855
Alignment:
Q  134 aagctagctttgcttgctttgaagaaaaa-cttacaaatggcgtgcctgattttctgccgtcatggaatgagtctctacatttttgtaaatggcaagggg 232  Q
    ||||| |||||||||||||| ||| |||| ||||||||||| || || |||| | |||| ||||||||||||||||||||||| |||   |||||||||     
T  35752656 aagcttgctttgcttgctttaaaggaaaagcttacaaatggtgtaccagattctttgccatcatggaatgagtctctacatttctgtgtgtggcaaggga 35752755  T
Q  233 ttaaatgtggtcgtgctcacatgagagtctctatcttgcatttggagaatcaaacctggggtggtactcttgaacgagccttgggaaatctaacatttct 332  Q
    ||| ||||||||||  ||||||||||||||||  |||||||||||| |||||||| | |||||| ||||||| || | | ||||| ||| ||||||||||    
T  35752756 ttacatgtggtcgtcgtcacatgagagtctcttccttgcatttggaaaatcaaacattgggtggcactcttggaccatctttgggtaatttaacatttct 35752855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 145 - 330
Target Start/End: Original strand, 35374256 - 35374442
Alignment:
Q  145 gcttgctttgaagaaaaa-cttacaaatggcgtgcctgattttctgccgtcatggaatgagtctctacatttttgtaaatggcaaggggttaaatgtggt 243  Q
    ||||||||||||| |||| || |||||||| || || || | ||| || ||||||||||||||| ||||||| ||| |||||||||| |||| |||||||    
T  35374256 gcttgctttgaaggaaaagctcacaaatggtgtaccagactctcttccatcatggaatgagtctttacatttctgtgaatggcaaggagttacatgtggt 35374355  T
Q  244 cgtgctcacatgagagtctctatcttgcatttggagaatcaaacctggggtggtactcttgaacgagccttgggaaatctaacattt 330  Q
    |||  ||||||||||||||||  |||||||||||| ||||||||   |||||| ||||| | || | | ||||||||||||||||||    
T  35374356 cgtcgtcacatgagagtctctgccttgcatttggaaaatcaaacactgggtggcactctcggaccatcattgggaaatctaacattt 35374442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 140 - 332
Target Start/End: Original strand, 35421513 - 35421706
Alignment:
Q  140 gctttgcttgctttgaa-gaaaaacttacaaatggcgtgcctgattttctgccgtcatggaatgagtctctacatttttgtaaatggcaaggggttaaat 238  Q
    ||||||||| ||||||| ||||||||||| |||||  | ||||||  ||| || ||||||||||| ||||| ||||| ||| ||||| | || |||| ||    
T  35421513 gctttgctttctttgaaagaaaaacttaccaatggtatacctgatgctcttccatcatggaatgaatctcttcatttctgtgaatgggagggtgttacat 35421612  T
Q  239 gtggtcgtgctcacatgagagtctctatcttgcatttggagaatcaaacctggggtggtactcttgaacgagccttgggaaatctaacatttct 332  Q
    | |||||    ||||||||||||||| ||||||||||||| |||||||  |||||||||||||||| || | |||| ||||||||||| |||||    
T  35421613 gcggtcgacgccacatgagagtctctgtcttgcatttggaaaatcaaaattggggtggtactcttggaccatccttaggaaatctaacctttct 35421706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 332
Target Start/End: Original strand, 35434858 - 35435051
Alignment:
Q  140 gctttgcttgctttgaa-gaaaaacttacaaatggcgtgcctgattttctgccgtcatggaatgagtctctacatttttgtaaatggcaaggggttaaat 238  Q
    ||||||||| ||||||| ||||||||||| |||||  | ||||||  ||| || ||||||||||| |||||  |||| ||| ||||| | || |||| ||    
T  35434858 gctttgctttctttgaaagaaaaacttaccaatggtatacctgatgctcttccatcatggaatgaatctctttatttctgtgaatgggagggtgttacat 35434957  T
Q  239 gtggtcgtgctcacatgagagtctctatcttgcatttggagaatcaaacctggggtggtactcttgaacgagccttgggaaatctaacatttct 332  Q
    | |||||    ||||||||||||||| ||||||||||||| |||||||  |||||||||||||||| || | |||| ||||||||||| |||||    
T  35434958 gcggtcgacgccacatgagagtctctgtcttgcatttggaaaatcaaaattggggtggtactcttggaccatccttaggaaatctaacctttct 35435051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 134 - 332
Target Start/End: Original strand, 30633132 - 30633331
Alignment:
Q  134 aagctagctttgcttgctttgaagaaaaa-cttacaaatggcgtgcctgattttctgccgtcatggaatgagtctctacatttttgtaaatggcaagggg 232  Q
    |||||||||||||||||||||||| |||| ||||||||||| ||  | |||| | |||| ||||||||||||||||||||||| ||| ||||| |||||     
T  30633132 aagctagctttgcttgctttgaaggaaaagcttacaaatggtgtatcagattatttgccatcatggaatgagtctctacatttctgtgaatgggaaggga 30633231  T
Q  233 ttaaatgtggtcgtgctcacatgagagtctctatcttgcatttggagaatcaaacctggggtggtactcttgaacgagccttgggaaatctaacatttct 332  Q
    ||| ||||||||||  ||||||||||||||||  |||||||||||| |||||||| |  ||||| ||||||| |  | ||||||||||||||||||||||    
T  30633232 ttacatgtggtcgtcgtcacatgagagtctctgccttgcatttggaaaatcaaacatttggtggcactcttggatcatccttgggaaatctaacatttct 30633331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 134 - 332
Target Start/End: Original strand, 30660861 - 30661060
Alignment:
Q  134 aagctagctttgcttgctttgaagaaaaa-cttacaaatggcgtgcctgattttctgccgtcatggaatgagtctctacatttttgtaaatggcaagggg 232  Q
    |||||||||||||||||||||||| |||| ||||||||||| ||  | |||| | |||| ||||||||||||||||||||||| ||| ||||| |||||     
T  30660861 aagctagctttgcttgctttgaaggaaaagcttacaaatggtgtatcagattatttgccatcatggaatgagtctctacatttctgtgaatgggaaggga 30660960  T
Q  233 ttaaatgtggtcgtgctcacatgagagtctctatcttgcatttggagaatcaaacctggggtggtactcttgaacgagccttgggaaatctaacatttct 332  Q
    ||| ||||||||||  ||||||||||||||||  |||||||||||| |||||||| |  ||||| ||||||| |  | ||||||||||||||||||||||    
T  30660961 ttacatgtggtcgtcgtcacatgagagtctctgccttgcatttggaaaatcaaacatttggtggcactcttggatcatccttgggaaatctaacatttct 30661060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 134 - 332
Target Start/End: Original strand, 30669541 - 30669740
Alignment:
Q  134 aagctagctttgcttgctttgaagaaaaa-cttacaaatggcgtgcctgattttctgccgtcatggaatgagtctctacatttttgtaaatggcaagggg 232  Q
    ||||| |||||||||||||||||| |||| ||||||||||| || ||  ||| | |||| ||||||||||||||||||||||| ||| ||||| |||||     
T  30669541 aagctggctttgcttgctttgaaggaaaagcttacaaatggtgtaccatattatttgccatcatggaatgagtctctacatttctgtgaatgggaaggga 30669640  T
Q  233 ttaaatgtggtcgtgctcacatgagagtctctatcttgcatttggagaatcaaacctggggtggtactcttgaacgagccttgggaaatctaacatttct 332  Q
    ||| ||||||||||  ||||||||||||| ||  |||||||||||| |||||||| |  ||||| ||||||| |  | ||||||||||| ||||||||||    
T  30669641 ttacatgtggtcgtcgtcacatgagagtcactgccttgcatttggaaaatcaaacatttggtggcactcttggatcatccttgggaaatttaacatttct 30669740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 163 - 332
Target Start/End: Original strand, 30631057 - 30631226
Alignment:
Q  163 cttacaaatggcgtgcctgattttctgccgtcatggaatgagtctctacatttttgtaaatggcaaggggttaaatgtggtcgtgctcacatgagagtct 262  Q
    ||||||||||| || || |||| | |||| ||||||||||||||||||||||| ||| ||||| ||||| ||| ||||||||||  ||||||||||||||    
T  30631057 cttacaaatggtgtaccagattatttgccatcatggaatgagtctctacatttctgtgaatgggaagggattacatgtggtcgtcgtcacatgagagtct 30631156  T
Q  263 ctatcttgcatttggagaatcaaacctggggtggtactcttgaacgagccttgggaaatctaacatttct 332  Q
    ||  |||||||||||| |||||||| |  ||||| ||||||| |  | ||||||||||||||||||||||    
T  30631157 ctgccttgcatttggaaaatcaaacatttggtggcactcttggatcatccttgggaaatctaacatttct 30631226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 118 - 260
Target Start/End: Complemental strand, 29625480 - 29625337
Alignment:
Q  118 gagttcagacacggacaagctagctttgcttgctttgaagaaaaa-cttacaaatggcgtgcctgattttctgccgtcatggaatgagtctctacatttt 216  Q
    |||||||||||| || ||||| |||||||||||||||||| |||| ||||| ||||| ||| | |||| |||||| ||||||||||||||| |||||||     
T  29625480 gagttcagacactgataagctcgctttgcttgctttgaaggaaaagcttacgaatggggtgtcggattctctgccatcatggaatgagtctttacatttc 29625381  T
Q  217 tgtaaatggcaaggggttaaatgtggtcgtgctcacatgagagt 260  Q
    ||| ||||||||||| ||| ||||| || | | |||||||||||    
T  29625380 tgtgaatggcaagggattacatgtgatcatccacacatgagagt 29625337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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