View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14506_low_28 (Length: 332)
Name: NF14506_low_28
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 238
Target Start/End: Original strand, 14519148 - 14519371
Alignment:
| Q |
15 |
caaaggctgcataggtaagggaagagtaattgttttactctcaagcatcaacacaacttcggacatctttggtcgtcgagatgctaaatcttgcacacat |
114 |
Q |
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| T |
14519148 |
caaaggctgcataggtaagggaagagtaattgatttactctcaagcatcaacacaatttcggacatctttggtcgtcgagatgctaaatcttgcacacat |
14519247 |
T |
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| Q |
115 |
aacatccctatttgtatgcatcgattaataacatcgttgttgggagtcaaatcactaatgcaagcatcaacaagttcctttgatctctttgtattccata |
214 |
Q |
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| T |
14519248 |
aacatccctatttgtatgcatcgattaataacatcgttattgggagtcaaatcactaatgcaagcatcgacaagttcctttgatctctttgtattccata |
14519347 |
T |
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| Q |
215 |
gatgccatgcctagaaccattcca |
238 |
Q |
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|||||||||||||||||||||||| |
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| T |
14519348 |
gatgccatgcctagaaccattcca |
14519371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 14519395 - 14519443
Alignment:
| Q |
284 |
aaaggactcgaggtctaatgcgataaacgattttcaaattcagagatta |
332 |
Q |
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| T |
14519395 |
aaaggactcgaggtctaatgcgataaacgattttcaaattcagagatta |
14519443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 36291222 - 36291117
Alignment:
| Q |
31 |
aagggaagagtaattgttttactctcaagcatcaacacaacttcggacatctttggtcgtcgagatgctaaatcttgcacacataacatccctatttgta |
130 |
Q |
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| T |
36291222 |
aagggaagagttgttgcttcactttcaagcatcaacaccactgaggacatgtttggtctatgagatgctgaatcttgcacacataacatccctatgtgga |
36291123 |
T |
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| Q |
131 |
tgcatc |
136 |
Q |
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|||||| |
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| T |
36291122 |
tgcatc |
36291117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 241
Target Start/End: Original strand, 2689980 - 2690203
Alignment:
| Q |
15 |
caaaggctgcataggtaagggaagagtaattgttttactctcaagcatcaacacaacttcggacatctttggtcgtcgagatgctaaatcttgcacacat |
114 |
Q |
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|||||||||| |||||||||||||||| ||| || ||||||||||||| | |||| |||||||| ||||||| |||||||| |||||||||||||| |
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| T |
2689980 |
caaaggctgcgtaggtaagggaagagttgttgcttcactctcaagcatcgaaacaatatcggacatgtttggtctatgagatgctgaatcttgcacacat |
2690079 |
T |
|
| Q |
115 |
aacatccctatttgtatgcatcgattaataacatcgttgttgggagtcaaatcactaatgcaagcatcaacaagttcctttgatctctttgtattccata |
214 |
Q |
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| T |
2690080 |
aacatccctatttgtatgcatc---tcaaagcctcagtgttgggactcaaatcatgaatgcaagcatccacaatttccattgctctctgatcgttccata |
2690176 |
T |
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| Q |
215 |
gatgccatgcctagaaccattccatca |
241 |
Q |
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| T |
2690177 |
gatgccatgcctacatccattccatca |
2690203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 2697786 - 2697907
Alignment:
| Q |
15 |
caaaggctgcataggtaagggaagagtaattgttttactctcaagcatcaacacaacttcggacatctttggtcgtcgagatgctaaatcttgcacacat |
114 |
Q |
| |
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|||||||||| |||||| ||||||||| ||| || ||||||||||| ||||||||||| |||||| ||||||| |||||||| |||||||||||||| |
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| T |
2697786 |
caaaggctgcgtaggtatgggaagagtcgttgcttcactctcaagcaacaacacaactttggacatatttggtctatgagatgctgaatcttgcacacat |
2697885 |
T |
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| Q |
115 |
aacatccctatttgtatgcatc |
136 |
Q |
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||||||||||||||||| |||| |
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| T |
2697886 |
aacatccctatttgtatacatc |
2697907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 329
Target Start/End: Original strand, 2690229 - 2690310
Alignment:
| Q |
250 |
aattagcttagtattagttcatctaaatcaatttaaaggactc--gaggtctaatgcgataaacgattttcaaattcagaga |
329 |
Q |
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|||||||||||||||||| | ||||| ||||||| |||| ||| ||| |||||| |||||| ||||||||| |||||||| |
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| T |
2690229 |
aattagcttagtattagtccctctaagtcaatttcaagggctcaaaaggactaatgtgataaaagattttcaatttcagaga |
2690310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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