View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14506_low_29 (Length: 327)
Name: NF14506_low_29
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 49116797 - 49116492
Alignment:
| Q |
1 |
ataccctaacgtttggaccctatgttggtcctgtgagcaaccatttcttgacaccaacataaacatttgaaccacaattgtcatggtttttgtcgagttt |
100 |
Q |
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| T |
49116797 |
ataccctaacgtttggaccccatgttggtcctatgagcaaccatttcttgacaccaacataaacatttgaaccacaattgtcatggtttttgtcgagttt |
49116698 |
T |
|
| Q |
101 |
tatggatatatgagaatgaagatgatattcaattggtggatatttttgttttagattgaagaaaactggttgatttttggggaagatgatcgaatggtgc |
200 |
Q |
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| T |
49116697 |
tatggatatatgagaatgaagatgatattcaattggtggatatttttgttttagattgaagaaaactggttgatttttggggaagatgatcgaatggtgc |
49116598 |
T |
|
| Q |
201 |
aacgattgattgattacatatcaaatgtcacatacgttaacattgtttatgtgaatatggatgaaacttgcactaaaaacaatcagttaaaaactttgga |
300 |
Q |
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||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49116597 |
aacgattgattgattacatatcaaaagtcacataagttaacattgtttatgtgaatatggatgaaacttgcactaaaaacaatcagttaaaaactttgga |
49116498 |
T |
|
| Q |
301 |
ggtttg |
306 |
Q |
| |
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|||||| |
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| T |
49116497 |
ggtttg |
49116492 |
T |
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