View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14506_low_3 (Length: 637)
Name: NF14506_low_3
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 20 - 633
Target Start/End: Original strand, 38778073 - 38778687
Alignment:
| Q |
20 |
tgactacgttatcctcttgaaatcttaacttacttgatgtaacttatttatcatcatcatgtcatcccaaagttgtttaaacgttatatattctctgttt |
119 |
Q |
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| T |
38778073 |
tgactacgttatcctcttgaaatcttaacttacttgatgtaacttatttatcatcatcatgtcatcccaaagttgtttaaacgttatatattctctgttt |
38778172 |
T |
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| Q |
120 |
aaccaatatgtcatcccaaataaaatggggtttctgtcatatgcaatggactgtggataatgaagaacaaaaagactatcaatgtggatgcggtatttcc |
219 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38778173 |
aaccaatatgtcatcccaaataaaacggggtttctgtcatatgcaatggactgtggataatgaagaacaaaaagactatcaatgtggatgcggtatttcc |
38778272 |
T |
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| Q |
220 |
ttgcattacttaggagaggcatggaacccttattccaggaatatatgtttcaaactgcttttaggctcattgtgactttattttgactgtgttcattgtg |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38778273 |
ttgcattacttaggagaggcatggaacccttattccaggaatatatgtttcaaactggttttaggctcattgtgactttattttgactgtgttcattgtg |
38778372 |
T |
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| Q |
320 |
gctttggctacaatgacttcatgtcatcaaggacttcatgatt-aaggagactttgacaaaggaaatagatgtatgcccttgtttgctacnnnnnnnnat |
418 |
Q |
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| T |
38778373 |
gctttggctacaaggacttcatgtcatcaaggacttcatgattcaaggagactttgacaaaggaaatagatgtatgcccttgcttgctacttttttttat |
38778472 |
T |
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| Q |
419 |
ctcttctcagtctcggctacttttgcattatctatccattgcagggaacttgatgcaaaagtatatatggtcgtactttcaaaaatgagaattttaatcg |
518 |
Q |
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| T |
38778473 |
ctcttctcagtctcggctacttttccattatctatccattgcagggaacttgatgcaaaagtatatatggtcgtactttcaaaaatgagaattttaatcg |
38778572 |
T |
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| Q |
519 |
tgagttctgcttgcttacccctttcttccactattcaaatttcattttatgttatttaccgaatggatgtgcattttcatttctttaaacccacctcact |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38778573 |
tgagttctgcttgcttacccctttcttccactattcaaatttcattttatgttatttaccgaatggatgtgcattttcatttctttaaacccacctcact |
38778672 |
T |
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| Q |
619 |
cctttacctttgctt |
633 |
Q |
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| T |
38778673 |
cctttacctttgctt |
38778687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 446 - 534
Target Start/End: Complemental strand, 52935107 - 52935019
Alignment:
| Q |
446 |
ttatctatccattgcagggaacttgatgcaaaagtatatatggtcgtactttcaaaaatgagaattttaatcgtgagttctgcttgctt |
534 |
Q |
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||||||||| ||||||||||||| || |||||||||| |||||||||||||||||| |||||||||||||||||||| |||| |||||| |
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| T |
52935107 |
ttatctatctattgcagggaactggaggcaaaagtatctatggtcgtactttcaaagatgagaattttaatcgtgagctctgtttgctt |
52935019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 446 - 534
Target Start/End: Complemental strand, 52942742 - 52942654
Alignment:
| Q |
446 |
ttatctatccattgcagggaacttgatgcaaaagtatatatggtcgtactttcaaaaatgagaattttaatcgtgagttctgcttgctt |
534 |
Q |
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||||||||| ||||||||||||| || |||||||||| |||||||||||||||||| |||||||||||||||||||| |||| |||||| |
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| T |
52942742 |
ttatctatctattgcagggaactggaggcaaaagtatctatggtcgtactttcaaagatgagaattttaatcgtgagctctgtttgctt |
52942654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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