View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14506_low_31 (Length: 322)

Name: NF14506_low_31
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14506_low_31
NF14506_low_31
[»] chr3 (5 HSPs)
chr3 (195-315)||(6984760-6984880)
chr3 (19-79)||(6984996-6985056)
chr3 (252-311)||(49179715-49179774)
chr3 (267-300)||(12987749-12987782)
chr3 (247-304)||(14338478-14338535)
[»] chr4 (5 HSPs)
chr4 (247-311)||(13117429-13117493)
chr4 (238-304)||(13307884-13307950)
chr4 (247-304)||(13484030-13484088)
chr4 (247-311)||(44362666-44362730)
chr4 (254-311)||(37496704-37496761)
[»] chr2 (5 HSPs)
chr2 (247-304)||(43586000-43586057)
chr2 (265-311)||(18512155-18512201)
chr2 (247-304)||(37211880-37211937)
chr2 (265-297)||(10250740-10250772)
chr2 (254-302)||(14450797-14450845)
[»] chr6 (4 HSPs)
chr6 (248-304)||(6751878-6751934)
chr6 (252-304)||(19369824-19369876)
chr6 (263-311)||(10031570-10031618)
chr6 (247-304)||(32225385-32225442)
[»] scaffold0024 (1 HSPs)
scaffold0024 (254-311)||(18110-18167)
[»] chr7 (6 HSPs)
chr7 (251-304)||(5937420-5937473)
chr7 (252-304)||(1885580-1885632)
chr7 (253-304)||(36196787-36196838)
chr7 (247-304)||(2144533-2144591)
chr7 (265-311)||(35238197-35238243)
chr7 (247-292)||(25956464-25956509)
[»] chr5 (3 HSPs)
chr5 (247-311)||(19167571-19167636)
chr5 (254-304)||(30080503-30080553)
chr5 (249-297)||(8420041-8420089)
[»] chr8 (4 HSPs)
chr8 (243-299)||(42874534-42874590)
chr8 (263-310)||(22600530-22600577)
chr8 (253-310)||(27733848-27733905)
chr8 (245-297)||(26434194-26434246)
[»] scaffold0314 (1 HSPs)
scaffold0314 (253-304)||(8955-9006)
[»] chr1 (1 HSPs)
chr1 (247-291)||(17007956-17008000)


Alignment Details
Target: chr3 (Bit Score: 121; Significance: 6e-62; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 195 - 315
Target Start/End: Complemental strand, 6984880 - 6984760
Alignment:
Q  195 gttgttgcatcacatttctgattgaagtcgtatccccgtgtctacacttgttgtgtccgacaccgactcttgtgattatattgaattgtgttattttctc 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6984880 gttgttgcatcacatttctgattgaagtcgtatccccgtgtctacacttgttgtgtccgacaccgactcttgtgattatattgaattgtgttattttctc 6984781  T
Q  295 aaaattttattggtgtctgtg 315  Q
    |||||||||||||||||||||    
T  6984780 aaaattttattggtgtctgtg 6984760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 6985056 - 6984996
Alignment:
Q  19 tgtagtagttgtctgaatatcggaaaacaaaggtaacctcgccttcactcagatccaattc 79  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||    
T  6985056 tgtagtagttgtctgaatatcggaatccaaaggtaacctcgccttcgctcagatccaattc 6984996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 49179715 - 49179774
Alignment:
Q  252 cgacaccgactcttgtgattatattgaattgtgttattttctcaaaattttattggtgtc 311  Q
    |||||||||| |||||||||| || ||||| ||| | |||||||||||||||| ||||||    
T  49179715 cgacaccgacacttgtgattacatcgaattatgtcactttctcaaaattttatcggtgtc 49179774  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 300
Target Start/End: Complemental strand, 12987782 - 12987749
Alignment:
Q  267 tgattatattgaattgtgttattttctcaaaatt 300  Q
    ||||||||||||||| ||||||||||||||||||    
T  12987782 tgattatattgaattatgttattttctcaaaatt 12987749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 14338478 - 14338535
Alignment:
Q  247 gtgtccgacaccgactcttgtgattatattgaattgtgttattttctcaaaattttat 304  Q
    ||||| |||||||||  ||||||||| |||||||| ||| ||||| ||||||||||||    
T  14338478 gtgtctgacaccgacatttgtgattacattgaattatgtcattttttcaaaattttat 14338535  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 13117493 - 13117429
Alignment:
Q  247 gtgtccgacaccgactcttgtgattatattgaattgtgttattttctcaaaattttattggtgtc 311  Q
    ||||||||||||||| |||||||||| |||||||| ||| |||||||| ||||||||||||||||    
T  13117493 gtgtccgacaccgacacttgtgattacattgaattttgtcattttctccaaattttattggtgtc 13117429  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 304
Target Start/End: Complemental strand, 13307950 - 13307884
Alignment:
Q  238 acacttgttgtgtccgacaccgactcttgtgattatattgaattgtgttattttctcaaaattttat 304  Q
    |||| ||| |||||||||||| || |||||||||| |||||||| ||| ||||||||||||||||||    
T  13307950 acacgtgtcgtgtccgacaccaacacttgtgattacattgaattatgtcattttctcaaaattttat 13307884  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 304
Target Start/End: Complemental strand, 13484088 - 13484030
Alignment:
Q  247 gtgtccgacaccgactcttgtgattatatt-gaattgtgttattttctcaaaattttat 304  Q
    ||||||||||| ||| |||||||||| ||| ||||| ||||||||||||||||||||||    
T  13484088 gtgtccgacactgacacttgtgattacatttgaattatgttattttctcaaaattttat 13484030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 44362730 - 44362666
Alignment:
Q  247 gtgtccgacaccgactcttgtgattatattgaattgtgttattttctcaaaattttattggtgtc 311  Q
    ||||| |||||| || |||||||||| ||| |||| ||| |||||||||||||||||| ||||||    
T  44362730 gtgtctgacaccaacacttgtgattacattaaattatgtcattttctcaaaattttatcggtgtc 44362666  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 311
Target Start/End: Complemental strand, 37496761 - 37496704
Alignment:
Q  254 acaccgactcttgtgattatattgaattgtgttattttctcaaaattttattggtgtc 311  Q
    |||||||| |||||||||| |||||||| ||| ||||||||||||  |||| ||||||    
T  37496761 acaccgacacttgtgattacattgaattatgtcattttctcaaaaaattatcggtgtc 37496704  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 43586000 - 43586057
Alignment:
Q  247 gtgtccgacaccgactcttgtgattatattgaattgtgttattttctcaaaattttat 304  Q
    ||||||||||||||| |||||||||| |||||||| ||| ||||||||||||||||||    
T  43586000 gtgtccgacaccgacacttgtgattacattgaattatgtcattttctcaaaattttat 43586057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 18512155 - 18512201
Alignment:
Q  265 tgtgattatattgaattgtgttattttctcaaaattttattggtgtc 311  Q
    |||||||| |||||||| | |||||||||||||||||||| ||||||    
T  18512155 tgtgattacattgaattatattattttctcaaaattttatcggtgtc 18512201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 37211880 - 37211937
Alignment:
Q  247 gtgtccgacaccgactcttgtgattatattgaattgtgttattttctcaaaattttat 304  Q
    ||||||||||  ||| ||||| |||| |||||||||||| |||||||| |||||||||    
T  37211880 gtgtccgacatagacacttgtaattacattgaattgtgtcattttctcgaaattttat 37211937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 10250772 - 10250740
Alignment:
Q  265 tgtgattatattgaattgtgttattttctcaaa 297  Q
    |||||||| ||||||||||||||||||||||||    
T  10250772 tgtgattacattgaattgtgttattttctcaaa 10250740  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 14450797 - 14450845
Alignment:
Q  254 acaccgactcttgtgattatattgaattgtgttattttctcaaaatttt 302  Q
    |||| ||| |||||||||| |||||||| ||| ||||||||||||||||    
T  14450797 acactgacacttgtgattacattgaattatgtgattttctcaaaatttt 14450845  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 6751878 - 6751934
Alignment:
Q  248 tgtccgacaccgactcttgtgattatattgaattgtgttattttctcaaaattttat 304  Q
    |||||||||||||| |||||||||| |||||||| ||| ||||||||||||||||||    
T  6751878 tgtccgacaccgacacttgtgattacattgaattatgtcattttctcaaaattttat 6751934  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 19369876 - 19369824
Alignment:
Q  252 cgacaccgactcttgtgattatattgaattgtgttattttctcaaaattttat 304  Q
    |||||||||| |||||||||| |||||||| ||| ||||||||||||||||||    
T  19369876 cgacaccgacacttgtgattacattgaattatgtcattttctcaaaattttat 19369824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 10031618 - 10031570
Alignment:
Q  263 cttgtgattatattgaattgtgttattttctcaaaattttattggtgtc 311  Q
    |||||||||| |||||||| ||| |||||||||||||||||| ||||||    
T  10031618 cttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 10031570  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 32225385 - 32225442
Alignment:
Q  247 gtgtccgacaccgactcttgtgattatattgaattgtgttattttctcaaaattttat 304  Q
    ||||||||||||||| | |||||||| ||||| |   |||||||||||||||||||||    
T  32225385 gtgtccgacaccgacacctgtgattacattgactcacgttattttctcaaaattttat 32225442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 18110 - 18167
Alignment:
Q  254 acaccgactcttgtgattatattgaattgtgttattttctcaaaattttattggtgtc 311  Q
    ||||| || |||| ||||| |||||||| |||||||||||||||||||||| ||||||    
T  18110 acaccaacacttgcgattacattgaattatgttattttctcaaaattttatcggtgtc 18167  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 5937420 - 5937473
Alignment:
Q  251 ccgacaccgactcttgtgattatattgaattgtgttattttctcaaaattttat 304  Q
    ||||||| ||| |||||||||| |||||||| ||| ||||||||||||||||||    
T  5937420 ccgacacagacacttgtgattacattgaattatgtcattttctcaaaattttat 5937473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 1885632 - 1885580
Alignment:
Q  252 cgacaccgactcttgtgattatattgaattgtgttattttctcaaaattttat 304  Q
    |||||||||| |||||||||| |||||||| ||| ||||| ||||||||||||    
T  1885632 cgacaccgacacttgtgattacattgaattatgtcattttttcaaaattttat 1885580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 304
Target Start/End: Complemental strand, 36196838 - 36196787
Alignment:
Q  253 gacaccgactcttgtgattatattgaattgtgttattttctcaaaattttat 304  Q
    |||||| || ||||||||||| ||||||| |||| |||||||||||||||||    
T  36196838 gacaccaacacttgtgattatgttgaattatgttgttttctcaaaattttat 36196787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 2144533 - 2144591
Alignment:
Q  247 gtgtccgacacc-gactcttgtgattatattgaattgtgttattttctcaaaattttat 304  Q
    |||||||||||| ||| | |||||||| |||||||| ||| ||||||||||||||||||    
T  2144533 gtgtccgacacctgacacgtgtgattacattgaattatgtcattttctcaaaattttat 2144591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 35238197 - 35238243
Alignment:
Q  265 tgtgattatattgaattgtgttattttctcaaaattttattggtgtc 311  Q
    ||||||||||||||||| ||| ||||||||||||| |||| ||||||    
T  35238197 tgtgattatattgaattatgtcattttctcaaaatattatcggtgtc 35238243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 292
Target Start/End: Complemental strand, 25956509 - 25956464
Alignment:
Q  247 gtgtccgacaccgactcttgtgattatattgaattgtgttattttc 292  Q
    ||||||||||||||| |||||||||| |||||||| ||| ||||||    
T  25956509 gtgtccgacaccgacacttgtgattacattgaattatgtcattttc 25956464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 19167571 - 19167636
Alignment:
Q  247 gtgtccgacaccgactcttgtgattatattgaattgtgtta-ttttctcaaaattttattggtgtc 311  Q
    ||||| ||||||||| |||||||||| |||||||||||| | |||| |||||||||||| ||||||    
T  19167571 gtgtctgacaccgacacttgtgattacattgaattgtgtcatttttttcaaaattttatcggtgtc 19167636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 30080503 - 30080553
Alignment:
Q  254 acaccgactcttgtgattatattgaattgtgttattttctcaaaattttat 304  Q
    |||||||  |||||||||| |||||||| ||| ||||||||||||||||||    
T  30080503 acaccgatacttgtgattacattgaattatgtcattttctcaaaattttat 30080553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 8420089 - 8420041
Alignment:
Q  249 gtccgacaccgactcttgtgattatattgaattgtgttattttctcaaa 297  Q
    ||||||||||||| ||||| |||| |||||||| ||||||||| |||||    
T  8420089 gtccgacaccgacacttgtaattacattgaattatgttattttttcaaa 8420041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 42874590 - 42874534
Alignment:
Q  243 tgttgtgtccgacaccgactcttgtgattatattgaattgtgttattttctcaaaat 299  Q
    |||||||||| |||| ||| |||||||||| |||||||| ||| |||||||||||||    
T  42874590 tgttgtgtccaacactgacacttgtgattacattgaattatgtcattttctcaaaat 42874534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 22600577 - 22600530
Alignment:
Q  263 cttgtgattatattgaattgtgttattttctcaaaattttattggtgt 310  Q
    ||||||||||||||||||| ||| |||||||  |||||||||||||||    
T  22600577 cttgtgattatattgaattatgtcattttctttaaattttattggtgt 22600530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 27733905 - 27733848
Alignment:
Q  253 gacaccgactcttgtgattatattgaattgtgttattttctcaaaattttattggtgt 310  Q
    |||||| || |||||||||| |||||||| | | |||||||||||||||||| |||||    
T  27733905 gacaccaacacttgtgattacattgaattatatcattttctcaaaattttatcggtgt 27733848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 26434246 - 26434194
Alignment:
Q  245 ttgtgtccgacaccgactcttgtgattatattgaattgtgttattttctcaaa 297  Q
    |||||||| |||||||| ||| | ||||||||||||| ||| |||||||||||    
T  26434246 ttgtgtccaacaccgacacttttaattatattgaattatgtgattttctcaaa 26434194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 304
Target Start/End: Complemental strand, 9006 - 8955
Alignment:
Q  253 gacaccgactcttgtgattatattgaattgtgttattttctcaaaattttat 304  Q
    ||||||||| ||||||||||  ||||||| ||| ||||||||||||||||||    
T  9006 gacaccgacacttgtgattacgttgaattatgtcattttctcaaaattttat 8955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 17007956 - 17008000
Alignment:
Q  247 gtgtccgacaccgactcttgtgattatattgaattgtgttatttt 291  Q
    ||||||||||| ||| ||||||||||||||||||| ||| |||||    
T  17007956 gtgtccgacactgacacttgtgattatattgaattatgtaatttt 17008000  T

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