View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14506_low_32 (Length: 300)
Name: NF14506_low_32
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 10 - 286
Target Start/End: Original strand, 8554412 - 8554691
Alignment:
| Q |
10 |
gcaaagggaaagaaaacttgaaataatagtataaagtttttcatgtcaataacttaccctaaaactcttttccatggggacagatccatatccatagtta |
109 |
Q |
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| T |
8554412 |
gcaaagggaaagaaaacttgaaataatagtataaagtttttcatgtcaataacttaccctaaaactcttttccatggggacagatccatatccatagtta |
8554511 |
T |
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| Q |
110 |
ccaatctggcctacagtaaccatctcagcagaagaacatgaagcagaagaaagccctaaataaacacacacacaaaaattaatataggatatagtatata |
209 |
Q |
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| T |
8554512 |
ccaatctggcctacagtaaccatctcagcagaagaacatgaagcagaagaaagccctaaataaacacacacacaaaaattaatataggatatagtatata |
8554611 |
T |
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| Q |
210 |
atatttaatcaattagttac--nnnnnnnncttctctc-aaaaggaaaaagaatataccagcagatgaaatgttgtaagt |
286 |
Q |
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| T |
8554612 |
atatttaatcaattagttacttttttttttcttgtctcaaaaaggaaaaagaatataccagcagatgaaatgttgtaagt |
8554691 |
T |
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