View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14506_low_37 (Length: 261)
Name: NF14506_low_37
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_low_37 |
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| [»] chr3 (4 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 47350225 - 47349981
Alignment:
| Q |
17 |
atgtcttccattccaaaagtagcatccgcaacccaccactcagcaacttcttccaacttcgtaggttgaagctcgttctccttcacaatctcatcccaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47350225 |
atgtcttccattccaaaagtagcatccgcaacccaccactcagcaacttcttccaacttcgtaggttgaagctcgttctccttcacaatctcatcccaaa |
47350126 |
T |
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| Q |
117 |
ctggacccttatccttcatcatctcagccaaccttaaacgaggacagtcctcgtatgcatactcctcaatctcaaattgttccgtcaaaaccttccacaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47350125 |
ctggacccttatccttcatcatctcagccaaccttaaacgaggaccgtcctcgtatccatactcctcaatctcaaattgttccgtcaaaaccttccacaa |
47350026 |
T |
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| Q |
217 |
ttgtttccacctaaaaacatcaccattgctacaattgaacgcttc |
261 |
Q |
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| T |
47350025 |
ttgtttccacctaaaaacatcaccattgctacaattgaacgcttc |
47349981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 28 - 261
Target Start/End: Original strand, 3818669 - 3818905
Alignment:
| Q |
28 |
tccaaaagtagcatccgcaacccaccactcagcaacttcttccaacttcgtaggttgaagctcgttctccttcacaatctcatcccaaactggaccctta |
127 |
Q |
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| T |
3818669 |
tccaaaacaagcatctgcaaaccaccactcagcaacttcttccagcttcgttacctgcaacccattctccttcacaatctcatcccaaacaggaccctta |
3818768 |
T |
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| Q |
128 |
tccttcatcatctcagccaaccttaaacgaggacagtcctcgt---atgcatactcctcaatctcaaattgttccgtcaaaaccttccacaattgtttcc |
224 |
Q |
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| T |
3818769 |
tccttcatcaactccgttaacttcaaacgaggaccttcctcgtcgaacccatactcctcaatcccaaattgttccgcgataaccttccacaattgcttcc |
3818868 |
T |
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| Q |
225 |
acctaaaaacatcaccattgctacaattgaacgcttc |
261 |
Q |
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| T |
3818869 |
acctaaaaacatcaccattactacaattgaatgcttc |
3818905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 28 - 261
Target Start/End: Complemental strand, 47339208 - 47338972
Alignment:
| Q |
28 |
tccaaaagtagcatccgcaacccaccactcagcaacttcttccaacttcgtaggttgaagctcgttctccttcacaatctcatcccaaactggaccctta |
127 |
Q |
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| T |
47339208 |
tccaaaacaagcatctgcaaaccaccactcagcaacttcttccagcttcgtcacctgcaacccattctccttcacaatctcatcccaaacaggaccctta |
47339109 |
T |
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| Q |
128 |
tccttcatcatctcagccaaccttaaacgaggacagtcctcgt---atgcatactcctcaatctcaaattgttccgtcaaaaccttccacaattgtttcc |
224 |
Q |
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| T |
47339108 |
tccttcatcaactccgttaacttcaaacgaggaccttcctcgtcgaacccatactcctcaatcccaaattgttccgcgataaccttccacaattgcttcc |
47339009 |
T |
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| Q |
225 |
acctaaaaacatcaccattgctacaattgaacgcttc |
261 |
Q |
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| T |
47339008 |
acctaaaaacatcaccattactacaattgaatgcttc |
47338972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 92 - 249
Target Start/End: Complemental strand, 47347614 - 47347454
Alignment:
| Q |
92 |
ttctccttcacaatctcatcccaaactggacccttatccttcatcatctcagccaaccttaaacgaggacagtcctcgt---atgcatactcctcaatct |
188 |
Q |
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| T |
47347614 |
ttctccttcacaatctcatcccaaacaggacccttatccttcatcaactccgacaacttcaaacgaggaccttcctcgtcaaacccatactcctcaatcc |
47347515 |
T |
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| Q |
189 |
caaattgttccgtcaaaaccttccacaattgtttccacctaaaaacatcaccattgctaca |
249 |
Q |
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| T |
47347514 |
caaactgttccgccaaaaccttccatagttgtttccatctaaaaacatcaccattgctaca |
47347454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 5390987 - 5391042
Alignment:
| Q |
206 |
accttccacaattgtttccacctaaaaacatcaccattgctacaattgaacgcttc |
261 |
Q |
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| T |
5390987 |
accttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttc |
5391042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 5394525 - 5394580
Alignment:
| Q |
206 |
accttccacaattgtttccacctaaaaacatcaccattgctacaattgaacgcttc |
261 |
Q |
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| T |
5394525 |
accttccacaaatgtttccacttgaaaacatcaccattactgcaattgaatgcttc |
5394580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 5399706 - 5399761
Alignment:
| Q |
206 |
accttccacaattgtttccacctaaaaacatcaccattgctacaattgaacgcttc |
261 |
Q |
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| T |
5399706 |
accttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttc |
5399761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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