View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14506_low_38 (Length: 257)
Name: NF14506_low_38
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 18094094 - 18093873
Alignment:
| Q |
19 |
cataggcaacattctaatagccaaaggcaaaccaggacaaattcttcttccagacccaaatggaataagctcaaaatgatgtcctttaacatcaatttca |
118 |
Q |
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| T |
18094094 |
cataggcaacattctaatagccaaaggcaagccaggacaaattcttctaccagacccaaatggaataagctcaaaatgatgtcctttaacatcaatttca |
18093995 |
T |
|
| Q |
119 |
ctgtccaaaaacctttctggtacaaaaacattagcattatcccatttatttgggtctctaccaataacccatgcattaaccaacacttgtgcatcttttg |
218 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
18093994 |
ttgtccaaaaacctttctggtataaaaacattagcattatcccatttatttgggtctctaccaatcacccatgcattaaccaacacttgtgcatcttttg |
18093895 |
T |
|
| Q |
219 |
gaataatgtattcaccaatttc |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
18093894 |
gaataatgtattcaccaatttc |
18093873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 18104102 - 18103885
Alignment:
| Q |
19 |
cataggcaacattctaatagccaaaggcaaaccaggacaaattcttcttccagacccaaatggaataagctcaaaatgatgtcctttaacatcaatttca |
118 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18104102 |
cataggcaatattctaatagccaaaggcaaaccaggacaaattcttcttccagacccaaatggaataagctcaaaatgatgtcctttaacatcaacttca |
18104003 |
T |
|
| Q |
119 |
ctgtccaaaaacctttctggtacaaaaacattagcattatcccatttatttgggtctctaccaataacccatgcattaaccaacacttgtgcatcttttg |
218 |
Q |
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|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| |
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| T |
18104002 |
ctatccaaaaacctctctggtacaaaaacattagcattatcccatttatttgggtctctaccaataacccatgcattgatcaaaacttgtgcatcttttg |
18103903 |
T |
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| Q |
219 |
gaataatgtattcaccaa |
236 |
Q |
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|||||||||| ||||||| |
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| T |
18103902 |
gaataatgtagtcaccaa |
18103885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 23244719 - 23244653
Alignment:
| Q |
49 |
accaggacaaattcttcttccagacccaaatggaataagctcaaaatgatgtcctttaacatcaatt |
115 |
Q |
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||||||||| |||||||||||||| |||||||| | ||| | |||||| ||||| ||||||||||| |
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| T |
23244719 |
accaggacacattcttcttccagatccaaatggtagaagttgaaaatgttgtcccctaacatcaatt |
23244653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 1370407 - 1370354
Alignment:
| Q |
169 |
tgggtctctaccaataacccatgcattaaccaacacttgtgcatcttttggaat |
222 |
Q |
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|||||||||||||||| ||||| ||||||| || | |||||||||||| ||||| |
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| T |
1370407 |
tgggtctctaccaatagcccatacattaacgaagatttgtgcatctttcggaat |
1370354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 23346848 - 23346803
Alignment:
| Q |
50 |
ccaggacaaattcttcttccagacccaaatggaataagctcaaaat |
95 |
Q |
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||||||||||||||||| |||| |||||||||||||| ||||||| |
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| T |
23346848 |
ccaggacaaattcttctaccagcaccaaatggaataagttcaaaat |
23346803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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