View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14506_low_41 (Length: 248)
Name: NF14506_low_41
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 5 - 240
Target Start/End: Original strand, 1116178 - 1116402
Alignment:
| Q |
5 |
caattataaccttatatataattatgtatttggcaccctaaagcttaaatatgaatataaaataaaattaagtaggtttaaaagagttttggatcaattc |
104 |
Q |
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| T |
1116178 |
caattacaaccttatatataatt------ttggcaccctaaagtttaaatatgaatataaaataaaattcagtaggtttaaaagagttttggatcaattc |
1116271 |
T |
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| Q |
105 |
ataattatattgtaaccaagtgtatgtggcaccctaaagcttttctataaaatatgattcgatagatttatgttctagaggtaagacaagtttctttaag |
204 |
Q |
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| T |
1116272 |
ataattatattgtaaccaagtgtatgtggcaccctaaagcttttctat-aaatatgattcgatagatttatgttctagaggtaagacaagtttctttaag |
1116370 |
T |
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| Q |
205 |
catacaatagttaattaccttggctgtggtgatatt |
240 |
Q |
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| T |
1116371 |
catacaatag----ttaccttggctgtggtgatatt |
1116402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 1068829 - 1068719
Alignment:
| Q |
5 |
caattataaccttatatataattatgtatttggcaccctaaagcttaaatatgaatataaaataaaattaagtaggtttaaaagagttttggatcaattc |
104 |
Q |
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| T |
1068829 |
caattataaccttaactataattatgtatgtggcaccgtaaagcttaaatatgaatataaaataaaattcagtagatttaaaagagttttggatcggttc |
1068730 |
T |
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| Q |
105 |
ataattatatt |
115 |
Q |
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| T |
1068729 |
aaaattatatt |
1068719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 7951687 - 7951595
Alignment:
| Q |
23 |
taattatgtatttggcaccctaaagcttaaatatgaatataaaataaaattaagtaggtttaaaagagttttggatcaattcataattatatt |
115 |
Q |
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| T |
7951687 |
taattatgcatatggcaccctaaagcttaaatatgaatataaaatataattcagtaggtttaaaagagatttggatcggttcaaaattatatt |
7951595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 1114699 - 1114631
Alignment:
| Q |
5 |
caattataaccttatatataattatgtatttggcaccctaaagcttaaatatgaatataaaataaaatt |
73 |
Q |
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| T |
1114699 |
caattacaaccttatctataattatgtatgtggcaccctaaagcttaaatataaatataaaataaaatt |
1114631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 27845639 - 27845683
Alignment:
| Q |
12 |
aaccttatatataattatgtatttggcaccctaaagcttaaatat |
56 |
Q |
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| T |
27845639 |
aaccttatctataattatgtatgtggcacgctaaagctcaaatat |
27845683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 53692136 - 53692092
Alignment:
| Q |
157 |
tatgattcgatagatttatgttctagaggtaagacaagtttcttt |
201 |
Q |
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| T |
53692136 |
tatgattcgatagctttctgttccagaggtgagacaagtttcttt |
53692092 |
T |
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