View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14506_low_48 (Length: 227)

Name: NF14506_low_48
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14506_low_48
NF14506_low_48
[»] chr4 (1 HSPs)
chr4 (1-222)||(33087406-33087645)
[»] chr1 (4 HSPs)
chr1 (125-191)||(33830236-33830302)
chr1 (1-54)||(33830049-33830102)
chr1 (1-54)||(33837864-33837917)
chr1 (127-191)||(33892401-33892465)
[»] chr3 (2 HSPs)
chr3 (18-83)||(41836760-41836823)
chr3 (81-172)||(41836838-41836930)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 33087406 - 33087645
Alignment:
Q  1 caaactataagcaattagtttgttcgttgcttaagctacaagttagcgaaataagactgaattagttagctagttagagatta----------------- 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||                     
T  33087406 caaactataagcaattagtttgttcgttgcttaagctacaagttagcgaaataagactgagttagttagctagttagagattaacttgattatatggttt 33087505  T
Q  84 -cttgttaatcaagtaaccgtggtttttaacataatcatcactatatatagggttaatgcacgttgtattttgtatcttctcgattcaatgagactcaca 182  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||    
T  33087506 acttgttaatcaagtaaccgtggtttttaacataatcatcactatatatagggttaatgcacgttgtattttgtatcttctcgattgaataagactaaca 33087605  T
Q  183 tagttttacttcatactctcttattcctcttctaaatatt 222  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33087606 tagttttacttcatactctcttattcctcttctaaatatt 33087645  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 191
Target Start/End: Original strand, 33830236 - 33830302
Alignment:
Q  125 tatatatagggttaatgcacgttgtattttgtatcttctcgattcaatgagactcacatagttttac 191  Q
    |||||||||||||||||||| |||||||||| |||||||| ||||||| ||| | ||| ||||||||    
T  33830236 tatatatagggttaatgcactttgtattttgcatcttctccattcaataagatttacacagttttac 33830302  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 33830049 - 33830102
Alignment:
Q  1 caaactataagcaattagtttgttcgttgcttaagctacaagttagcgaaataa 54  Q
    ||||||||||||| |||||||||| |||||||||| ||||||||||| ||||||    
T  33830049 caaactataagcagttagtttgttagttgcttaagatacaagttagctaaataa 33830102  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 33837917 - 33837864
Alignment:
Q  1 caaactataagcaattagtttgttcgttgcttaagctacaagttagcgaaataa 54  Q
    ||||||||||||| |||||||||| |||||||||| ||||||||||| ||||||    
T  33837917 caaactataagcagttagtttgttagttgcttaagatacaagttagctaaataa 33837864  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 33892401 - 33892465
Alignment:
Q  127 tatatagggttaatgcacgttgtattttgtatcttctcgattcaatgagactcacatagttttac 191  Q
    |||||||||||||||||| |||||||||| |||||||| ||||||| ||| | ||| ||||||||    
T  33892401 tatatagggttaatgcactttgtattttgcatcttctccattcaataagatttacacagttttac 33892465  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 41836760 - 41836823
Alignment:
Q  18 gtttgttcgttgcttaagctacaagttagcgaaataagactgaattagttagctagttagagatta 83  Q
    ||||||| |||| ||| ||||||||||||| |||||||| ||| |||||||  |||||||||||||    
T  41836760 gtttgttagttgtttatgctacaagttagctaaataagattgagttagtta--tagttagagatta 41836823  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 172
Target Start/End: Original strand, 41836838 - 41836930
Alignment:
Q  81 ttacttgttaatcaagtaaccgtggttt-ttaacataatcatcactatatatagggttaatgcacgttgtattttgtatcttctcgattcaat 172  Q
    ||||||||||||||||||| ||| |||| ||| ||||||| |   || ||||| | |||||| || |||||||||| |||||||| |||||||    
T  41836838 ttacttgttaatcaagtaagcgtagtttattagcataatcctttttacatataagattaatgtaccttgtattttgcatcttctccattcaat 41836930  T

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