View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14506_low_5 (Length: 587)
Name: NF14506_low_5
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 212 - 572
Target Start/End: Original strand, 52396050 - 52396413
Alignment:
| Q |
212 |
caagattataaatatgtatgcaatgataacatatgaagatacagagaattacgattattaataggattgtgagaannnnnnngacttacataggtgttga |
311 |
Q |
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| T |
52396050 |
caagattataaatatgtatgcaatgataacatatgaagatacagagaattacgattattaataggattgtgagaatttttttgacttacataggtgttga |
52396149 |
T |
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| Q |
312 |
gctggcgaatgaagctagaaaaattattatgcttaaagtacttaggaagaagaattttggagaattcatgagaatcccaaacaacaaaactatcacgaga |
411 |
Q |
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| T |
52396150 |
gctggcgaatgaagctagaaaaattattatgcttaaagtacttaggaagaagaattttggagaattcatgagaatcccaaacaacaaaactatcacgaga |
52396249 |
T |
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| Q |
412 |
agcactccatgaaacaatcgggtcagtttccggatcatccaccatttcaaaagttttcttgagaaacggtggtggaccaacctcatgtagcccttccatt |
511 |
Q |
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| T |
52396250 |
agcactccatgaaacaatcgggtcagtttccagatcctccaccatttcaaaagtcttcttgagaaacggtggtggaccaacctcatgtagcccttccatt |
52396349 |
T |
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| Q |
512 |
ggttttggaaacctgagtgaagatgaagcgt---tagcaccgtcgtcttcttcaagaacttctt |
572 |
Q |
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| T |
52396350 |
ggttttggaaacctgagtgaagatgaagcgtgagcagcaccgtcgtcttcttcaagaacttctt |
52396413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 52395903 - 52396031
Alignment:
| Q |
7 |
attctaatcgagaacaacaaacatgtcaaaaatcaattcaacatctgtaaaagaggaaccaaacattcatagctccctataaatatgaatcattttatgt |
106 |
Q |
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| T |
52395903 |
attctaatcgagaacaacaaacatgtcaaaaatcaattcaacatctgtaaaagaggaaccagacattcatagctccctataaatatggatcattttatgt |
52396002 |
T |
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| Q |
107 |
taaatcaactttttaacaaaattaatttt |
135 |
Q |
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| T |
52396003 |
taaatcaactttttaacaaaattaatttt |
52396031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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