View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14506_low_53 (Length: 220)

Name: NF14506_low_53
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14506_low_53
NF14506_low_53
[»] chr8 (26 HSPs)
chr8 (32-204)||(21033686-21033858)
chr8 (42-204)||(590620-590782)
chr8 (32-204)||(9021301-9021472)
chr8 (28-204)||(29554979-29555154)
chr8 (32-205)||(3276161-3276333)
chr8 (32-204)||(23179755-23179925)
chr8 (42-204)||(28895328-28895490)
chr8 (42-204)||(4812681-4812841)
chr8 (42-204)||(25684471-25684631)
chr8 (42-204)||(28327736-28327896)
chr8 (42-204)||(16752716-16752877)
chr8 (42-204)||(16757461-16757622)
chr8 (42-204)||(28332459-28332619)
chr8 (75-204)||(2267217-2267346)
chr8 (118-204)||(33032556-33032642)
chr8 (118-204)||(17799618-17799704)
chr8 (117-204)||(26268424-26268511)
chr8 (118-204)||(30423113-30423200)
chr8 (75-204)||(15944733-15944861)
chr8 (75-204)||(15949394-15949522)
chr8 (113-204)||(17847576-17847666)
chr8 (39-101)||(22684971-22685032)
chr8 (75-179)||(28228376-28228476)
chr8 (70-119)||(17799720-17799769)
chr8 (125-196)||(31035133-31035206)
chr8 (70-119)||(33032491-33032540)
[»] chr4 (38 HSPs)
chr4 (32-204)||(4556253-4556425)
chr4 (28-204)||(18586779-18586954)
chr4 (32-204)||(31300240-31300412)
chr4 (42-204)||(15830967-15831129)
chr4 (28-204)||(16689134-16689310)
chr4 (42-205)||(15316784-15316947)
chr4 (32-204)||(4884689-4884862)
chr4 (42-204)||(8529093-8529255)
chr4 (42-204)||(16489176-16489337)
chr4 (32-204)||(4569914-4570082)
chr4 (32-204)||(25699568-25699737)
chr4 (44-204)||(15312150-15312304)
chr4 (42-204)||(11853377-11853537)
chr4 (81-204)||(16638692-16638815)
chr4 (70-204)||(13072175-13072307)
chr4 (118-204)||(47566394-47566481)
chr4 (117-204)||(36769379-36769467)
chr4 (108-204)||(55822159-55822253)
chr4 (118-205)||(4558212-4558300)
chr4 (118-204)||(36771297-36771384)
chr4 (144-204)||(7050451-7050511)
chr4 (113-204)||(26557636-26557726)
chr4 (118-204)||(25614114-25614200)
chr4 (64-130)||(7050499-7050562)
chr4 (123-196)||(9022367-9022440)
chr4 (115-204)||(32274096-32274184)
chr4 (39-101)||(47868368-47868429)
chr4 (28-101)||(40637031-40637102)
chr4 (39-101)||(6764806-6764867)
chr4 (117-204)||(4874673-4874760)
chr4 (39-87)||(8631742-8631789)
chr4 (70-104)||(36769301-36769335)
chr4 (39-101)||(2485178-2485241)
chr4 (113-200)||(3982376-3982462)
chr4 (123-196)||(10112932-10113005)
chr4 (70-104)||(47566315-47566349)
chr4 (70-102)||(4558133-4558165)
chr4 (123-189)||(19322756-19322824)
[»] scaffold0004 (1 HSPs)
scaffold0004 (42-204)||(188436-188598)
[»] chr3 (49 HSPs)
chr3 (42-204)||(5858372-5858534)
chr3 (42-204)||(47878365-47878527)
chr3 (42-200)||(54193051-54193209)
chr3 (42-204)||(10612972-10613134)
chr3 (28-204)||(10896818-10896993)
chr3 (32-204)||(4535428-4535602)
chr3 (42-200)||(54188334-54188492)
chr3 (42-204)||(29914147-29914309)
chr3 (32-204)||(47883076-47883245)
chr3 (32-204)||(27762180-27762348)
chr3 (32-204)||(38002687-38002857)
chr3 (32-204)||(10949454-10949622)
chr3 (64-204)||(11079366-11079505)
chr3 (42-204)||(10595228-10595387)
chr3 (42-204)||(16462029-16462191)
chr3 (28-204)||(10094268-10094441)
chr3 (28-204)||(10201148-10201321)
chr3 (69-204)||(22626178-22626312)
chr3 (32-174)||(48390444-48390584)
chr3 (28-204)||(10100285-10100458)
chr3 (28-204)||(10208194-10208367)
chr3 (42-204)||(6303138-6303298)
chr3 (32-204)||(20031512-20031678)
chr3 (32-204)||(27544091-27544261)
chr3 (32-200)||(13893281-13893445)
chr3 (118-204)||(3329794-3329881)
chr3 (78-204)||(16996737-16996863)
chr3 (99-184)||(7417953-7418037)
chr3 (39-101)||(4308584-4308645)
chr3 (39-101)||(25690659-25690720)
chr3 (76-204)||(26762894-26763026)
chr3 (39-101)||(27101563-27101624)
chr3 (39-101)||(51727309-51727370)
chr3 (13-101)||(43225954-43226040)
chr3 (39-101)||(43228184-43228245)
chr3 (39-87)||(29956557-29956604)
chr3 (39-87)||(30005712-30005759)
chr3 (39-97)||(9604919-9604976)
chr3 (115-204)||(15823804-15823892)
chr3 (48-101)||(27101488-27101540)
chr3 (113-196)||(11072915-11072998)
chr3 (39-99)||(35918254-35918313)
chr3 (121-204)||(46966842-46966925)
chr3 (70-105)||(7417701-7417736)
chr3 (70-104)||(3329715-3329749)
chr3 (113-204)||(27703364-27703455)
chr3 (123-189)||(561977-562044)
chr3 (76-104)||(7768505-7768533)
chr3 (123-179)||(7768559-7768614)
[»] chr2 (24 HSPs)
chr2 (42-204)||(35894455-35894617)
chr2 (42-204)||(22712710-22712872)
chr2 (42-204)||(30478820-30478982)
chr2 (32-204)||(20050216-20050388)
chr2 (42-204)||(12781415-12781576)
chr2 (42-204)||(17943364-17943525)
chr2 (32-202)||(37170948-37171116)
chr2 (42-204)||(27517833-27517997)
chr2 (46-204)||(20054959-20055117)
chr2 (42-204)||(17932460-17932622)
chr2 (42-204)||(33674599-33674761)
chr2 (32-204)||(38190816-38190985)
chr2 (42-204)||(22717419-22717581)
chr2 (42-204)||(2740769-2740929)
chr2 (28-204)||(17462251-17462424)
chr2 (42-204)||(39686811-39686971)
chr2 (42-204)||(45567237-45567397)
chr2 (42-204)||(2736033-2736193)
chr2 (42-204)||(39679873-39680033)
chr2 (113-204)||(33603892-33603982)
chr2 (39-101)||(45280290-45280351)
chr2 (117-204)||(30261967-30262053)
chr2 (39-101)||(5377738-5377799)
chr2 (123-192)||(11578308-11578378)
[»] chr7 (30 HSPs)
chr7 (42-204)||(25409957-25410118)
chr7 (42-204)||(34547057-34547219)
chr7 (42-204)||(25351180-25351341)
chr7 (42-204)||(25356874-25357035)
chr7 (44-204)||(7464712-7464872)
chr7 (42-204)||(30246796-30246958)
chr7 (32-204)||(44512719-44512891)
chr7 (32-204)||(44144060-44144229)
chr7 (42-204)||(7069608-7069768)
chr7 (42-204)||(7074615-7074775)
chr7 (42-204)||(25405221-25405381)
chr7 (70-204)||(44016855-44016989)
chr7 (42-204)||(3320244-3320404)
chr7 (42-204)||(3324992-3325152)
chr7 (73-204)||(8378698-8378829)
chr7 (70-203)||(44010945-44011078)
chr7 (32-204)||(42006483-42006651)
chr7 (88-204)||(15541189-15541304)
chr7 (116-198)||(2120798-2120880)
chr7 (118-204)||(21369543-21369630)
chr7 (76-200)||(6067399-6067522)
chr7 (136-204)||(1099628-1099696)
chr7 (28-195)||(45366460-45366619)
chr7 (39-100)||(48457572-48457632)
chr7 (39-95)||(40946247-40946302)
chr7 (41-94)||(2120746-2120798)
chr7 (144-196)||(26210582-26210633)
chr7 (123-196)||(6048890-6048963)
chr7 (123-196)||(11081527-11081600)
chr7 (171-204)||(1099728-1099761)
[»] chr6 (32 HSPs)
chr6 (42-204)||(17695045-17695207)
chr6 (39-202)||(22352048-22352213)
chr6 (42-204)||(25466093-25466255)
chr6 (39-204)||(22342995-22343162)
chr6 (32-204)||(33215644-33215815)
chr6 (32-204)||(13467657-13467827)
chr6 (42-204)||(25941471-25941632)
chr6 (42-204)||(13883303-13883463)
chr6 (42-204)||(31248908-31249068)
chr6 (42-204)||(35201520-35201680)
chr6 (42-204)||(13878555-13878715)
chr6 (42-204)||(16785747-16785907)
chr6 (28-204)||(26887418-26887591)
chr6 (91-204)||(3577708-3577821)
chr6 (64-204)||(26643025-26643164)
chr6 (64-204)||(26748991-26749130)
chr6 (71-204)||(5166010-5166141)
chr6 (42-158)||(35208801-35208915)
chr6 (136-204)||(17035975-17036043)
chr6 (118-204)||(19702056-19702143)
chr6 (42-132)||(30974963-30975053)
chr6 (42-132)||(30981402-30981492)
chr6 (42-132)||(30987566-30987656)
chr6 (148-204)||(12166340-12166397)
chr6 (115-204)||(24542868-24542956)
chr6 (39-99)||(1230556-1230615)
chr6 (39-99)||(26064929-26064988)
chr6 (39-99)||(26084898-26084957)
chr6 (123-190)||(16455627-16455696)
chr6 (113-200)||(7293834-7293920)
chr6 (39-101)||(28241626-28241688)
chr6 (125-196)||(30445562-30445633)
[»] chr1 (15 HSPs)
chr1 (42-204)||(9526292-9526454)
chr1 (42-204)||(21353540-21353702)
chr1 (32-204)||(25133890-25134059)
chr1 (42-204)||(9521542-9521703)
chr1 (42-204)||(2232425-2232585)
chr1 (28-204)||(2393476-2393649)
chr1 (70-204)||(3091300-3091433)
chr1 (118-204)||(4144877-4144963)
chr1 (106-200)||(14996931-14997024)
chr1 (82-204)||(46783010-46783131)
chr1 (151-204)||(2401415-2401468)
chr1 (28-104)||(2401489-2401563)
chr1 (39-100)||(13449856-13449916)
chr1 (70-119)||(4144979-4145028)
chr1 (39-101)||(2617431-2617490)
[»] chr5 (26 HSPs)
chr5 (32-204)||(42238120-42238291)
chr5 (39-204)||(1240251-1240416)
chr5 (42-204)||(22672658-22672822)
chr5 (32-204)||(40222580-40222751)
chr5 (43-204)||(35385646-35385807)
chr5 (42-204)||(25452321-25452483)
chr5 (42-204)||(2298195-2298357)
chr5 (42-204)||(25445318-25445480)
chr5 (42-204)||(1170639-1170799)
chr5 (34-204)||(17841443-17841611)
chr5 (70-200)||(10627217-10627347)
chr5 (70-204)||(11962627-11962759)
chr5 (71-204)||(16093484-16093617)
chr5 (118-204)||(31782651-31782738)
chr5 (75-204)||(26406667-26406795)
chr5 (99-204)||(28786289-28786392)
chr5 (78-204)||(25837970-25838095)
chr5 (39-101)||(4409970-4410031)
chr5 (39-101)||(6747217-6747278)
chr5 (39-101)||(39854397-39854458)
chr5 (40-101)||(6744975-6745035)
chr5 (39-101)||(10529404-10529465)
chr5 (113-196)||(13294680-13294763)
chr5 (123-196)||(29748357-29748430)
chr5 (123-196)||(35430177-35430250)
chr5 (123-196)||(2144761-2144835)
[»] scaffold0209 (1 HSPs)
scaffold0209 (42-201)||(17183-17342)
[»] scaffold0256 (1 HSPs)
scaffold0256 (42-204)||(16151-16313)
[»] scaffold0131 (1 HSPs)
scaffold0131 (13-204)||(30941-31129)
[»] scaffold0006 (1 HSPs)
scaffold0006 (42-204)||(224647-224807)
[»] scaffold1764 (1 HSPs)
scaffold1764 (42-171)||(1262-1391)
[»] scaffold0552 (1 HSPs)
scaffold0552 (39-101)||(1136-1197)
[»] scaffold0038 (1 HSPs)
scaffold0038 (39-101)||(41788-41850)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 21033686 - 21033858
Alignment:
Q  32 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21033686 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 21033785  T
Q  132 aagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  21033786 aagccaacatacaaactagggtttatagataatttctcttggcaacaacactaggcttgggattgttttgatt 21033858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 590620 - 590782
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||  ||||||    
T  590620 agatttgtttcagttttttaagggtttactttccactataaatctaagccttgtatcagatgataaagagtgtagaaaaacagggtttagaaaccaacat 590719  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  590720 acaaactagggtttatagagaatttctcttggcaacaacacttgggttgggattgttttgatt 590782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 32 - 204
Target Start/End: Complemental strand, 9021472 - 9021301
Alignment:
Q  32 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 131  Q
    ||||||||  |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9021472 ttttcagtttagatttgtttcagttttttaagggtttactttc-actataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 9021374  T
Q  132 aagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  9021373 aaaccaacatacaaactagggtttatagagaatttctctttgcaacaacactagggttcggattgttttgatt 9021301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 28 - 204
Target Start/End: Complemental strand, 29555154 - 29554979
Alignment:
Q  28 gtatttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggt 127  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29555154 gtatttttcagtta-gatttgtttcagttttttaagggtttacttttcactataaatataagcgttgtatcagatgataaagtgtgtagaaaaacagggt 29555056  T
Q  128 ttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||  || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29555055 ttagaaaccatcatacaaactagggtttttagagaatttctcttggcaacaacactagggttgggattgttttgatt 29554979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 32 - 205
Target Start/End: Original strand, 3276161 - 3276333
Alignment:
Q  32 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 131  Q
    ||||| ||||||||||||| || ||||| ||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3276161 ttttctgtgaagatttgttccaattttt-aagaggttacttttcactataaatataagccttgtattagatgataaagtgtgtagaaaaacagggtttag 3276259  T
Q  132 aagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgattt 205  Q
    ||| ||||| | ||||||||||||||||||||||| |||| |||||||| | ||||||||||||||||||||||    
T  3276260 aagccaacacaaaaactagggtttatagagaatttttctttgcaacaactccagggttgggattgttttgattt 3276333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 32 - 204
Target Start/End: Complemental strand, 23179925 - 23179755
Alignment:
Q  32 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 131  Q
    ||||||||||||||||||| || | ||||||| | | ||||||||||||||||||||| |||||||||||||| ||   | |||||||||||||||||||    
T  23179925 ttttcagtgaagatttgttcca-tattttaagagat-actttccactataaatataagtcttgtatcagatgaaaagaagagtagaaaaacagggtttag 23179828  T
Q  132 aagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23179827 aagccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 23179755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 28895328 - 28895490
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    |||||||||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||||| | ||||||||||||| |||||||||  |||||    
T  28895328 agatttgtttcagtttttaaagggtttactttccactataaataca-gccttgtatcagatgataaaagggtgtagaaaaacaaggtttagaaaccaaca 28895426  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  28895427 tacaaactagggtttatagagaatttctcttggcaacaactctagggttgagattgttttgatt 28895490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 4812841 - 4812681
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    |||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||   |||||    
T  4812841 agatttgtttcagttttttaagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagac--caaca 4812745  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
     ||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  4812744 aacaaactagggttcatagagaatctctcttggcaacaactctagggttgggattgttttgatt 4812681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 25684471 - 25684631
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    |||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| ||||||||   |||||    
T  25684471 agatttgtttcagttttttaagggtttactttccactataaatacaa-ccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagac--caaca 25684567  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
     ||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||    
T  25684568 aacaaactagggtttatagagaatctctcttagcaacaactctagggttgggattgttttgatt 25684631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 28327736 - 28327896
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||   |||||    
T  28327736 agatttgtttcagttttataagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagac--caaca 28327832  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
     ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  28327833 aacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgatt 28327896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 16752877 - 16752716
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaa-cagggtttagaagtcaac 139  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||| || ||||||||   ||||    
T  16752877 agatttgtttcagttttataagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaaacaaggtttagac--caac 16752781  T
Q  140 atacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    | ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  16752780 aaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgatt 16752716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 16757622 - 16757461
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaa-cagggtttagaagtcaac 139  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||| || ||||||||   ||||    
T  16757622 agatttgtttcagttttataagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaaacaaggtttagac--caac 16757526  T
Q  140 atacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    | ||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||    
T  16757525 aaacaaactagggtttatagagaatctctcttgacaacaactctagggttgggattgttttgatt 16757461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 28332459 - 28332619
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||   ||| |    
T  28332459 agatttgtttcagttttataagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagac--caata 28332555  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
     ||||||||||||||||| ||||| |||||||| |||||| |||||||||||||||||||||||    
T  28332556 aacaaactagggtttataaagaatctctcttggtaacaactctagggttgggattgttttgatt 28332619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 75 - 204
Target Start/End: Complemental strand, 2267346 - 2267217
Alignment:
Q  75 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggc 174  Q
    |||||||||||||| |||||||||||||||  | |||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2267346 cactataaatataaaccttgtatcagatgaatatgtgtgtagaaaa-catggtttagaagccaacatacaaactagggtttatagagaatttctcttggc 2267248  T
Q  175 aac-aacactagggttgggattgttttgatt 204  Q
    ||| ||||||| ||||| |||||||||||||    
T  2267247 aacaaacactacggttgagattgttttgatt 2267217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 33032556 - 33032642
Alignment:
Q  118 aaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33032556 aaaacatggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgagattgttttgatt 33032642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 17799704 - 17799618
Alignment:
Q  118 aaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  17799704 aaaacagggtttagaagccaacatacaaactaggatttatagagaatttgtctaggcaacaacactagggttgggattgttttgatt 17799618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 117 - 204
Target Start/End: Complemental strand, 26268511 - 26268424
Alignment:
Q  117 aaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  26268511 aaaaacaaggtttagaagcctacatacaaactagggtttatagagaatttctcttggcaacaacactagagttgagattgttttgatt 26268424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 30423113 - 30423200
Alignment:
Q  118 aaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgggattgttttgatt 204  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||    
T  30423113 aaaacagggtttagaagccaacaaacaaactagggtttatagagaatttctcttggcaacaaacactagggctgagattgttttgatt 30423200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 75 - 204
Target Start/End: Original strand, 15944733 - 15944861
Alignment:
Q  75 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggc 174  Q
    ||||||| |||||| |||||||||| |||| ||||||||| |||||||||||||||||||  |||| ||||| ||||||||||||||||  |||||||||    
T  15944733 cactatagatataaaccttgtatcatatga-aaagtgtgtggaaaaacagggtttagaagctaacaaacaaattagggtttatagagaa-atctcttggc 15944830  T
Q  175 aac-aacactagggttgggattgttttgatt 204  Q
    ||| ||||||||||||  ||||| |||||||    
T  15944831 aacaaacactagggttctgattgctttgatt 15944861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 75 - 204
Target Start/End: Original strand, 15949394 - 15949522
Alignment:
Q  75 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggc 174  Q
    ||||||||||||||  |||||||||||||| ||||||||  ||||||||||||||| ||| ||||| ||||||||||||||| |||||| |||||||  |    
T  15949394 cactataaatataaatcttgtatcagatga-aaagtgtgaggaaaaacagggtttaaaagccaacacacaaactagggtttacagagaa-ttctctttac 15949491  T
Q  175 aac-aacactagggttgggattgttttgatt 204  Q
    ||| ||||||||| ||| |||||||| ||||    
T  15949492 aacaaacactaggtttgtgattgtttggatt 15949522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 113 - 204
Target Start/End: Original strand, 17847576 - 17847666
Alignment:
Q  113 gtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaa-cactagggttgggattgttttgatt 204  Q
    ||||||||||| ||||||||| | |||| |||||||| |||||||||||| ||||||| |||||||| ||||| |||||||||||||||||||    
T  17847576 gtagaaaaacaaggtttagaaatgaaca-acaaactaaggtttatagaga-tttctctaggcaacaaacactatggttgggattgttttgatt 17847666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 22685032 - 22684971
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcaga 101  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||||||    
T  22685032 tgaagatttgtttcagttttttaagggattacttt-cactataaatatagaccttgtatcaga 22684971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 28228376 - 28228476
Alignment:
Q  75 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggc 174  Q
    |||||||||||||| ||||  ||||||||| ||| |  ||||||||||| |||||||||| ||||| | |||||| ||||||||||||| |||| |||||    
T  28228376 cactataaatataaacctt--atcagatgaaaaatta-gtagaaaaacatggtttagaaggcaacaaataaactaaggtttatagagaa-ttcttttggc 28228471  T
Q  175 aacaa 179  Q
    |||||    
T  28228472 aacaa 28228476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 17799769 - 17799720
Alignment:
Q  70 ctttccactataaatataagccttgtatcagatgataaagtgtgtagaaa 119  Q
    ||||||||||||||||||| |||| ||||||||||| | |||||||||||    
T  17799769 ctttccactataaatataaaccttatatcagatgattatgtgtgtagaaa 17799720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 31035133 - 31035206
Alignment:
Q  125 ggtttagaagtcaacatacaaactagggtttatagagaattt-ctcttggcaac-aacactagggttgggattg 196  Q
    ||||||||||||||||   |||||||||||| || ||| ||| ||||||||||| |||||||||||||||||||    
T  31035133 ggtttagaagtcaacaagaaaactagggtttgtatagagtttgctcttggcaacaaacactagggttgggattg 31035206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 33032491 - 33032540
Alignment:
Q  70 ctttccactataaatataagccttgtatcagatgataaagtgtgtagaaa 119  Q
    ||||||||||||||||||| |||||||| ||||||| | |||||||||||    
T  33032491 ctttccactataaatataaaccttgtattagatgattacgtgtgtagaaa 33032540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 32 - 204
Target Start/End: Complemental strand, 4556425 - 4556253
Alignment:
Q  32 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4556425 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 4556326  T
Q  132 aagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4556325 aaaccaacttacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgtttcgatt 4556253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 28 - 204
Target Start/End: Original strand, 18586779 - 18586954
Alignment:
Q  28 gtatttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggt 127  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18586779 gtatttttcagtta-gatttgtttcagttttttaagggtttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaatagggt 18586877  T
Q  128 ttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18586878 ttagaaaccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 18586954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 31300240 - 31300412
Alignment:
Q  32 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  31300240 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagctttgtatcatatgataaagtgtgtagaaaaacagggtttag 31300339  T
Q  132 aagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||  |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31300340 aaaccaacattcaaactagggtttatagagaatttctctttgcaacaacactagggttgggattgttttgatt 31300412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 15830967 - 15831129
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  15830967 agatttgtttcagttttttaagggtttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacat 15831066  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  15831067 acaaactagggtttatagaaaatttttcttggcaacaacactagggttgggattgttttgatt 15831129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 28 - 204
Target Start/End: Complemental strand, 16689310 - 16689134
Alignment:
Q  28 gtatttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggt 127  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16689310 gtatttttcagtgaagatttgtttcaattttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggt 16689211  T
Q  128 ttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||  |||||| |||||||||||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||    
T  16689210 ttagaaaccaacattcaaactagggtttatagataatttctctttgcaacaactctaggtttggaattgttttgatt 16689134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 42 - 205
Target Start/End: Original strand, 15316784 - 15316947
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||    
T  15316784 agatttgtttaagttttttaagggtttactttccactataaatataagccttgtatcagatggtaaagtgtgtagaaaaacagggtttagaaaccaacat 15316883  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgattt 205  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  15316884 acaaactagggtttatagagaatttctcttggcagcaacactagggttcggattgttttgattt 15316947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 4884689 - 4884862
Alignment:
Q  32 ttttcagtgaagatttgtttcagtttttt-aaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggttta 130  Q
    |||||||||||||||||||||| |||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4884689 ttttcagtgaagatttgtttcaatttttttaaagggttactttccattataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggttta 4884788  T
Q  131 gaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||| ||||||||||| |||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||    
T  4884789 gaagccaacatacaaattagggtttatagagaatttctctttgcaacaacactgggggtgggattgttttgatt 4884862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 8529093 - 8529255
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||  ||||||    
T  8529093 agatttgtttcagttttttaagggtatactttccactataaatataagctttgtatcagatcataaagtgtgtagaaaaatagggtttagaaaccaacat 8529192  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8529193 acaaactagggtttatagagaatttctcttggcaacaccactagggttgggattgttttgatt 8529255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 16489176 - 16489337
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    |||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||    
T  16489176 agatttgtttcagttttttaagagtttactttccactatgaatataagccttgtatcagatgataaagtgtgtagaaaa-cagggtttagaaaccaacat 16489274  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  16489275 acaaactagggtttatagagaatttctcttggcaacaacactaaggttgagattgttttgatt 16489337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 4569914 - 4570082
Alignment:
Q  32 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 131  Q
    ||||||||||||||||||| || | ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  4569914 ttttcagtgaagatttgttcca-tattttaaggg-ttactttc-actataaatataagccttgtatcagatgataaagtgtgtagaaaa-cagagtttag 4570009  T
Q  132 aagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4570010 aagccaacatacaaactagggtttatagagaatttctcttggcaacatcactagggttgggattgttttgatt 4570082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 25699568 - 25699737
Alignment:
Q  32 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 131  Q
    ||||| ||||||||||||| || | ||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||     
T  25699568 ttttctgtgaagatttgttcca-tattttaaggg-ttactttccactataaatataagtcttgtatcatatgataaagtgtgtagaaaa-cagggtttaa 25699664  T
Q  132 aagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25699665 aagccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 25699737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 44 - 204
Target Start/End: Original strand, 15312150 - 15312304
Alignment:
Q  44 atttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacatac 143  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |       ||||||||||||||||||| |||||||||  ||||||||    
T  15312150 atttgtttcagttttttaagggtttactttccactataaatataagccttgtttg------taaagtgtgtagaaaaacaaggtttagaaaccaacatac 15312243  T
Q  144 aaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15312244 aaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 15312304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 11853377 - 11853537
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    |||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||   |||||    
T  11853377 agatttgtttcagttttttaagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagac--caaca 11853473  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
     | ||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  11853474 aataaactagggtttatagagaatctctcttggcaacaactctagggttgagattgttttgatt 11853537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 81 - 204
Target Start/End: Original strand, 16638692 - 16638815
Alignment:
Q  81 aaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaac-aa 179  Q
    |||||||| ||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||    
T  16638692 aaatataaaccttgtatcagatgaaaaagtgtgtagaaaa-cagggtttagaagccaacatacaaactagggtttatagagaatttctctttgcaacaaa 16638790  T
Q  180 cactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||||    
T  16638791 cactagggttgggattgttttgatt 16638815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 70 - 204
Target Start/End: Complemental strand, 13072307 - 13072175
Alignment:
Q  70 ctttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctc 169  Q
    |||||||||||| |||||| ||||||||||||||| | | ||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||    
T  13072307 ctttccactatagatataaaccttgtatcagatga-atattgtgtagaaaa-caaggtttagaagccaacatacaaactagggtttatagagaatttctc 13072210  T
Q  170 ttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||||| |||||||||||||||||||||||||    
T  13072209 ttggcaacatcactagggttgggattgttttgatt 13072175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 47566394 - 47566481
Alignment:
Q  118 aaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgggattgttttgatt 204  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||    
T  47566394 aaaacagggtttagaagccaacatacaaactagggtttatagagaatttatcttggcaacaaacactagggttgagattgttttgatt 47566481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 117 - 204
Target Start/End: Original strand, 36769379 - 36769467
Alignment:
Q  117 aaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgggattgttttgatt 204  Q
    ||||||| |||||||||| ||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||    
T  36769379 aaaaacaaggtttagaagccaacatacaaactagggtttgaagagaatttctcttggcaacaaacactagggttgggattgttttgatt 36769467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 108 - 204
Target Start/End: Original strand, 55822159 - 55822253
Alignment:
Q  108 agtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||| ||||||||   ||||| ||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  55822159 agtgtgtagaaaaacaaggtttagac--caacaaacaaattagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgatt 55822253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 118 - 205
Target Start/End: Original strand, 4558212 - 4558300
Alignment:
Q  118 aaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgggattgttttgattt 205  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |  |||||||||    
T  4558212 aaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaaacactagggctgggttgtttttgattt 4558300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 36771297 - 36771384
Alignment:
Q  118 aaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgggattgttttgatt 204  Q
    |||| |||||||||||| ||||||||||||||||||||  |||||||||||||||||||| ||||||||||||| |||||||||||||    
T  36771297 aaaatagggtttagaagccaacatacaaactagggtttgaagagaatttctcttggcaacaaacactagggttgagattgttttgatt 36771384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 7050511 - 7050451
Alignment:
Q  144 aaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  7050511 aaactagggtttatagagaatttctcttggcaacaacactaaggttgtgattgttttgatt 7050451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 113 - 204
Target Start/End: Original strand, 26557636 - 26557726
Alignment:
Q  113 gtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaa-cactagggttgggattgttttgatt 204  Q
    |||||||||||||| ||||||  ||| | ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  26557636 gtagaaaaacagggattagaaa-caaaaaacaaactagggtttatagaga-tttctcttggcaacaaacactagggttgggattgttttgatt 26557726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 25614200 - 25614114
Alignment:
Q  118 aaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgggattgttttgatt 204  Q
    |||||||  |||||||| |||||||||| ||| ||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||    
T  25614200 aaaacagaatttagaagccaacatacaa-ctatggtttatagagaatttctcttggtaacaaacactagggttgagattgttttgatt 25614114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 7050562 - 7050499
Alignment:
Q  64 gggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaac-agggttta 130  Q
    |||||||||||||||||||||||||||||||||    |||||||||||||||||||||| ||||||||    
T  7050562 gggttactttccactataaatataagccttgta----atgataaagtgtgtagaaaaactagggttta 7050499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 9022367 - 9022440
Alignment:
Q  123 agggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgggattg 196  Q
    |||||||||||||||||||  |||||||||||| ||||||| ||||||||||||| ||||||| |||||||||||    
T  9022367 agggtttagaagtcaacatcaaaactagggtttgtagagaa-ttctcttggcaacaaacactatggttgggattg 9022440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 204
Target Start/End: Complemental strand, 32274184 - 32274096
Alignment:
Q  115 agaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaa-cactagggttgggattgttttgatt 204  Q
    ||||||||| |||||||||| ||||| ||||||||| ||||||||||| ||||| |||||||||| |||||| |||| |||||||||||||    
T  32274184 agaaaaacaaggtttagaagccaaca-acaaactagagtttatagaga-tttctattggcaacaaacactagagttgagattgttttgatt 32274096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 47868368 - 47868429
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcaga 101  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||||||    
T  47868368 tgaagatttgtttcagttttttaagggattacttt-cactataaatatagaccttgtatcaga 47868429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 40637031 - 40637102
Alignment:
Q  28 gtatttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcaga 101  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||||||    
T  40637031 gtatttttcagtca-gatttgtttcagttttttaagggattacttt-cactataaatatagaccttgtatcaga 40637102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 6764806 - 6764867
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcaga 101  Q
    ||||||||||||||| ||||||||||| ||||||| |||||||||||||  ||||||||||||    
T  6764806 tgaagatttgtttcatttttttaagggattacttt-cactataaatatagaccttgtatcaga 6764867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 204
Target Start/End: Complemental strand, 4874760 - 4874673
Alignment:
Q  117 aaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaa-cactagggttgggattgttttgatt 204  Q
    ||||||| |||||||||| ||||| |||||||||| |||| |||||||| |||| | |||||| |||||| |||||| |||||||||||    
T  4874760 aaaaacaaggtttagaagccaacaaacaaactaggatttaaagagaatt-ctctagacaacaaacactagagttgggtttgttttgatt 4874673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 8631789 - 8631742
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatata 87  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  8631789 tgaagatttgtttcagttttttaagggattacttt-cactataaatata 8631742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 36769301 - 36769335
Alignment:
Q  70 ctttccactataaatataagccttgtatcagatga 104  Q
    |||||||||||||||||||||||||||||||||||    
T  36769301 ctttccactataaatataagccttgtatcagatga 36769335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 2485241 - 2485178
Alignment:
Q  39 tgaagatttgtttcagtt--ttttaaggggttactttccactataaatataagccttgtatcaga 101  Q
    ||||||||||||||||||  ||||||||| ||||||| |||||||||||||  ||||||||||||    
T  2485241 tgaagatttgtttcagttttttttaagggattacttt-cactataaatatagaccttgtatcaga 2485178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 3982462 - 3982376
Alignment:
Q  113 gtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaa-cactagggttgggattgtttt 200  Q
    ||||||||| |||||| ||||   |||| ||||||||||||| |||| || |||||||||||||||| ||||||||||| |||||||||    
T  3982462 gtagaaaaatagggttcagaaacaaaca-acaaactagggttcatagtga-tttctcttggcaacaaacactagggttgagattgtttt 3982376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 10112932 - 10113005
Alignment:
Q  123 agggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgggattg 196  Q
    |||||||||||| ||||| | |||||||||||| |||||  || ||||||||||| ||||||||||||| |||||    
T  10112932 agggtttagaagccaacacaaaaactagggtttgtagag-tttgctcttggcaacaaacactagggttgagattg 10113005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 47566315 - 47566349
Alignment:
Q  70 ctttccactataaatataagccttgtatcagatga 104  Q
    |||||||||||||||||||||||||||||| ||||    
T  47566315 ctttccactataaatataagccttgtatcatatga 47566349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 4558133 - 4558165
Alignment:
Q  70 ctttccactataaatataagccttgtatcagat 102  Q
    |||||||||||||||||||| ||||||||||||    
T  4558133 ctttccactataaatataagtcttgtatcagat 4558165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 19322756 - 19322824
Alignment:
Q  123 agggtttagaagtcaacatacaaactagggtttatagagaattt-ctcttggcaac-aacactagggtt 189  Q
    ||||||||||||||||||   |||||||||||| || ||| ||| ||||||||||| ||||||||||||    
T  19322756 agggtttagaagtcaacaagaaaactagggtttgtatagagtttgctcttggcaacaaacactagggtt 19322824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 188598 - 188436
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  188598 agatttgtttcagttttttaagggtttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacat 188499  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  188498 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 188436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 49)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 5858372 - 5858534
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  5858372 agatttgtttcagttttttaagggtttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacat 5858471  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5858472 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 5858534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 47878527 - 47878365
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  47878527 agatttgtttcagttttttaagggtttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacat 47878428  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47878427 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 47878365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 42 - 200
Target Start/End: Original strand, 54193051 - 54193209
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  54193051 agatttgtttcagttttttaagggtgtactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacat 54193150  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgtttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54193151 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgtttt 54193209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 10613134 - 10612972
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||  ||||||    
T  10613134 agatttgtttcagttttttaagtgtttactttccactataaatataagccttgtatcatatgataaagtgtgtagaaaaatagggtttagaaaccaacat 10613035  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10613034 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 10612972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 28 - 204
Target Start/End: Original strand, 10896818 - 10896993
Alignment:
Q  28 gtatttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggt 127  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||||||||||||| | ||| ||||||||||||||||||||||||||||||| |||||    
T  10896818 gtatttttcagtta-gatttgtttcagttttttaagggtttactttccactataaagacaagtcttgtatcagatgataaagtgtgtagaaaaatagggt 10896916  T
Q  128 ttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10896917 ttagaaaccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 10896993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 4535428 - 4535602
Alignment:
Q  32 ttttcagtgaagatttgtttcagtttt--ttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggttt 129  Q
    |||||||||||||||||||||| ||||  |||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  4535428 ttttcagtgaagatttgtttcaattttgtttaaagggttactttccactataattataagtcttgtatcagatgataaagtgtgtagaaaaacagggttt 4535527  T
Q  130 agaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4535528 agaagccaacatacaaactagggttcatagagaatttctcttggcaacaacactagggttgggtttgttttgatt 4535602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 42 - 200
Target Start/End: Original strand, 54188334 - 54188492
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||    
T  54188334 agatttgtttcagttttttaagggtttactttccactataaatataagccttgtatcaggtgataaagtgtgtagaaaaacagggtttagaaaccaacat 54188433  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgtttt 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  54188434 acaaactaaggtttatagagaatttctcttggcaacaacactaggtttgggattgtttt 54188492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 29914309 - 29914147
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    |||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  29914309 agatttgtttcagttttttaagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacagggtttagaagccaaca 29914211  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29914210 ttcaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 29914147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 32 - 204
Target Start/End: Complemental strand, 47883245 - 47883076
Alignment:
Q  32 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 131  Q
    ||||||||||||||||||| || | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  47883245 ttttcagtgaagatttgttcca-tattttaaggg-ttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaa-caggatttag 47883149  T
Q  132 aagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  47883148 aagccaacatacaaactagggtttatagataatttctcttggcaacaacactatggttgggattgttttgatt 47883076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 32 - 204
Target Start/End: Complemental strand, 27762348 - 27762180
Alignment:
Q  32 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 131  Q
    ||||||||||||||||||| || | ||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||  ||||||||||    
T  27762348 ttttcagtgaagatttgttcca-tattttaaggg-ttactttccactataaatattagtcttgtatcagatgataaagtgtgtagaaa--cagggtttag 27762253  T
Q  132 aagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27762252 aagccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgagattgttttgatt 27762180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 38002687 - 38002857
Alignment:
Q  32 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataa-gccttgtatcagatgataaagtgtgtagaaaaacagggttta 130  Q
    |||||||||||||||||||||| | ||||||||| |||||||||||||||||||||| ||||||||||| |||||| | ||||||||||| |||| ||||    
T  38002687 ttttcagtgaagatttgtttca-tattttaaggg-ttactttccactataaatataaagccttgtatcaaatgatacactgtgtagaaaa-caggattta 38002783  T
Q  131 gaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38002784 gaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgagattgttttgatt 38002857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 32 - 204
Target Start/End: Complemental strand, 10949622 - 10949454
Alignment:
Q  32 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 131  Q
    |||||| |||||||||||| || | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10949622 ttttcaatgaagatttgttcca-tattttaaggg-ttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaa-cagggtttag 10949526  T
Q  132 aagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||    
T  10949525 aagccaacatacaaactagggtttatagagaatttctcttggcaacaactctagggtt-cgattgttttgatt 10949454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 64 - 204
Target Start/End: Original strand, 11079366 - 11079505
Alignment:
Q  64 gggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaa 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |  ||||||||||||| ||||||||||||||||||||||||||||    
T  11079366 gggttactttccactataaatataagccttgtatcagatgataaagtgtgtatatag-cagggtttagaagccaacatacaaactagggtttatagagaa 11079464  T
Q  164 tttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11079465 tttctcttggcaacaacactagggttgggattgttttgatt 11079505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 10595387 - 10595228
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||  ||||||||||||| ||| |||||||  ||||||    
T  10595387 agatttgtttcagttttttaagggtttactttccactataaatataagtcttgtatcagatgata--gtgtgtagaaaaaaagg-tttagaaaccaacat 10595291  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  10595290 acaaactagggtttatagagaatttatcttggcaacaacactagggtttggattgttttgatt 10595228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 16462029 - 16462191
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    |||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| |||||||||  |||||    
T  16462029 agatttgtttcagttttttaagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagaaaccaaca 16462127  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||| |||||||||||||| ||||||||  ||||||||||||||||||||||    
T  16462128 tacaaactagggtttacagagaatttctcttagcaacaactatagggttgggattgttttgatt 16462191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 28 - 204
Target Start/End: Complemental strand, 10094441 - 10094268
Alignment:
Q  28 gtatttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacaggg 126  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||    
T  10094441 gtatttttcagtta-gatttgtttcagttttttaagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaagg 10094344  T
Q  127 tttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||   ||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  10094343 tttagac--caacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgatt 10094268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 28 - 204
Target Start/End: Complemental strand, 10201321 - 10201148
Alignment:
Q  28 gtatttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacaggg 126  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||    
T  10201321 gtatttttcagtta-gatttgtttcagttttttaagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaagg 10201224  T
Q  127 tttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||   ||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  10201223 tttagac--caacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgatt 10201148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 69 - 204
Target Start/End: Complemental strand, 22626312 - 22626178
Alignment:
Q  69 actttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttct 168  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||    
T  22626312 actttccactataaataca-gccttgtatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacatacaaactagggtttatggagaatttct 22626214  T
Q  169 cttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||| |||||||||||||||||||||||    
T  22626213 cttggcaacaactctagggttgggattgttttgatt 22626178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 32 - 174
Target Start/End: Complemental strand, 48390584 - 48390444
Alignment:
Q  32 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 131  Q
    ||||||||||||||||||||||  |||| |  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48390584 ttttcagtgaagatttgtttcaacttttaa--gggttactttccactataaatataagcctcgtatcagatgataaagtgtgtagaaaaacagggtttag 48390487  T
Q  132 aagtcaacatacaaactagggtttatagagaatttctcttggc 174  Q
    ||| | |||||||||||||||||||||||||||||||||||||    
T  48390486 aagccgacatacaaactagggtttatagagaatttctcttggc 48390444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 28 - 204
Target Start/End: Complemental strand, 10100458 - 10100285
Alignment:
Q  28 gtatttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacaggg 126  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||||||| |||||| | ||||||||||||||||||||| ||||||||||||||| ||    
T  10100458 gtatttttcagtta-gatttgtttcagttttttaagggtttactttccacgataaat-tcagccttgtatcagatgataaaagtgtgtagaaaaacaagg 10100361  T
Q  127 tttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||   ||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  10100360 tttagac--caacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgatt 10100285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 28 - 204
Target Start/End: Complemental strand, 10208367 - 10208194
Alignment:
Q  28 gtatttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacaggg 126  Q
    |||||||||||| | ||||||||| ||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||    
T  10208367 gtatttttcagtta-gatttgttttagttttttaagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaagg 10208270  T
Q  127 tttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||   ||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  10208269 tttagac--caacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgatt 10208194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 6303138 - 6303298
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||   |||||    
T  6303138 agatttgtttcagttttataagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagac--caaca 6303234  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
     ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  6303235 aacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgatt 6303298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 32 - 204
Target Start/End: Complemental strand, 20031678 - 20031512
Alignment:
Q  32 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 131  Q
    ||||| ||||||||||||| || | ||||||||  |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20031678 ttttccgtgaagatttgttcca-tattttaagga-ttactttcgactataaatataagtcttgtatcagatgataaagtgtgtagaaaaacagggtttag 20031581  T
Q  132 aagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||    |  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20031580 aag----ccgacaaactaggctttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 20031512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 27544091 - 27544261
Alignment:
Q  32 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaa-cagggttt 129  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||| || |||||    
T  27544091 ttttcagt-aagatttgtttcagttttttaagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaaacaaggttt 27544188  T
Q  130 agaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||   ||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  27544189 agac--caacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgatt 27544261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 32 - 200
Target Start/End: Original strand, 13893281 - 13893445
Alignment:
Q  32 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 131  Q
    ||||||||| ||||||||| ||  |||| |  ||||||||||  ||||||||||||  | |||||||| |||| ||||||||||||||| || |||||||    
T  13893281 ttttcagtgcagatttgttccaaattttaa--gggttactttt-actataaatatagacattgtatcaaatgaaaaagtgtgtagaaaa-caaggtttag 13893376  T
Q  132 aagtcaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgggattgtttt 200  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  13893377 aagtcaacataaaaactagggtttatagagaa-ttctcttggcaacaaacactagggttgggattgtttt 13893445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 3329794 - 3329881
Alignment:
Q  118 aaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaa-caacactagggttgggattgttttgatt 204  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||    
T  3329794 aaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaataaacactagggttgggaatgttttgatt 3329881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 78 - 204
Target Start/End: Original strand, 16996737 - 16996863
Alignment:
Q  78 tataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaa- 176  Q
    ||||||||||| ||||||||||||| | |||||||  ||||| ||| |||||||||| ||||| |||||||||||||||||||||| ||||||||| ||     
T  16996737 tataaatataaaccttgtatcagataaaaaagtgttaagaaacacaaggtttagaagccaacaaacaaactagggtttatagagaa-ttctcttggtaat 16996835  T
Q  177 caacactagggttgggattgttttgatt 204  Q
     |||||||||||||| | ||||||||||    
T  16996836 aaacactagggttggaaatgttttgatt 16996863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 7417953 - 7418037
Alignment:
Q  99 agatgataaagtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacacta 184  Q
    ||||||| | |||||||||||| | ||||||||||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||    
T  7417953 agatgattatgtgtgtagaaaa-cggggtttagaagccaacataaaaactagggtttataaagaatttctcttggcaataacacta 7418037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 4308645 - 4308584
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcaga 101  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||||||    
T  4308645 tgaagatttgtttcagttttttaagggattacttt-cactataaatatagaccttgtatcaga 4308584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 25690720 - 25690659
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcaga 101  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||||||    
T  25690720 tgaagatttgtttcagttttttaagggattacttt-cactataaatatagaccttgtatcaga 25690659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 204
Target Start/End: Original strand, 26762894 - 26763026
Alignment:
Q  76 actataaatataagccttgtatcagatgataa-----agtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctct 170  Q
    ||||||||||||| ||||||||||||||| ||     || | |||||||||||||||||||||   |||| |||||||||| ||||||||| |||||||     
T  26762894 actataaatataaaccttgtatcagatgaaaagaggtagggagtagaaaaacagggtttagaaacgaaca-acaaactaggatttatagag-atttctcc 26762991  T
Q  171 tggcaac-aacactagggttgggattgttttgatt 204  Q
    ||| ||| ||||||||||||| ||||| |||||||    
T  26762992 tgggaacaaacactagggttgtgattgatttgatt 26763026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 27101624 - 27101563
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcaga 101  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||||||    
T  27101624 tgaagatttgtttcagttttttaagggattacttt-cactataaatatagaccttgtatcaga 27101563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 51727370 - 51727309
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcaga 101  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||||||    
T  51727370 tgaagatttgtttcagttttttaagggattacttt-cactataaatatagaccttgtatcaga 51727309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 43225954 - 43226040
Alignment:
Q  13 agatgaaaatgaattgtatttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcaga 101  Q
    |||| ||||| || ||||||||| | ||||||||||||||||||||||||||| ||||||| |||||||||||||  | ||||||||||    
T  43225954 agataaaaataaaatgtattttt-attgaagatttgtttcagttttttaagggattacttt-cactataaatatagacattgtatcaga 43226040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 43228184 - 43228245
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcaga 101  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||  | ||||||||||    
T  43228184 tgaagatttgtttcagttttttaagggattacttt-cactataaatatagacattgtatcaga 43228245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 29956557 - 29956604
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatata 87  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  29956557 tgaagatttgtttcagttttttaagggattacttt-cactataaatata 29956604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 30005712 - 30005759
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatata 87  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  30005712 tgaagatttgtttcagttttttaagggattacttt-cactataaatata 30005759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 9604976 - 9604919
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtat 97  Q
    ||||||||||||| ||||||||||||| ||||||| |||||||||||||  ||||||||    
T  9604976 tgaagatttgttttagttttttaagggattacttt-cactataaatatagaccttgtat 9604919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 204
Target Start/End: Complemental strand, 15823892 - 15823804
Alignment:
Q  115 agaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgggattgttttgatt 204  Q
    ||||||||| ||||| |||| ||||| ||||||||||||||||||||  |||||||| | ||| |||||||||| || |||||||||||||    
T  15823892 agaaaaacaaggtttggaagccaaca-acaaactagggtttatagag-ttttctctttgaaacaaacactagggctgagattgttttgatt 15823804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 27101540 - 27101488
Alignment:
Q  48 gtttcagttttttaaggggttactttccactataaatataagccttgtatcaga 101  Q
    |||||||||||||||||| ||||||| |||||||||||||  ||||||||||||    
T  27101540 gtttcagttttttaagggattacttt-cactataaatatagaccttgtatcaga 27101488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 196
Target Start/End: Original strand, 11072915 - 11072998
Alignment:
Q  113 gtagaaaaaca-gggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattg 196  Q
    ||||||||||| |||||||||||||||||   ||||||| ||||  ||||  ||||||||||||||||  |||||||||||||||    
T  11072915 gtagaaaaacaagggtttagaagtcaacaacaaaactagagtttggagagt-tttctcttggcaacaaacctagggttgggattg 11072998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 35918313 - 35918254
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatca 99  Q
    ||||||||||||| ||||||| ||||| ||||||| |||||||||||||  ||||||||||    
T  35918313 tgaagatttgttttagtttttaaagggattacttt-cactataaatatagaccttgtatca 35918254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 204
Target Start/End: Complemental strand, 46966925 - 46966842
Alignment:
Q  121 acagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaa-cactagggttgggattgttttgatt 204  Q
    |||||||||||||| |||||   ||| || |||||||||||| || ||||||||||||| ||||||||||| |||||||| ||||    
T  46966925 acagggtttagaagccaacaacaaaattaaggtttatagaga-ttcctcttggcaacaaacactagggttgagattgtttcgatt 46966842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 105
Target Start/End: Original strand, 7417701 - 7417736
Alignment:
Q  70 ctttccactataaatataagccttgtatcagatgat 105  Q
    ||||||||||||||||||| ||||||||||||||||    
T  7417701 ctttccactataaatataaaccttgtatcagatgat 7417736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 3329715 - 3329749
Alignment:
Q  70 ctttccactataaatataagccttgtatcagatga 104  Q
    |||| ||||||||||||||||||||||||||||||    
T  3329715 cttttcactataaatataagccttgtatcagatga 3329749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 204
Target Start/End: Complemental strand, 27703455 - 27703364
Alignment:
Q  113 gtagaaaaacagggtttagaagtcaacatacaaactagggttta-tagagaatttctcttggcaacaa-cactagggttgggattgttttgatt 204  Q
    ||||||||||| ||||||||||  |||| | ||||||||||||  |||||| |||||||||||| ||| ||||||| || ||||||||||||||    
T  27703455 gtagaaaaacaaggtttagaagcaaaca-agaaactagggttttgtagaga-tttctcttggcatcaaacactaggatttggattgttttgatt 27703364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 562044 - 561977
Alignment:
Q  123 agggtttagaagtcaacatacaaactagggtttatagaga-atttctcttggcaac-aacactagggtt 189  Q
    |||||||||||||||||||  |||||||||||| || |||  |||||||||||||| ||||||||||||    
T  562044 agggtttagaagtcaacat-gaaactagggtttgtatagagttttctcttggcaacaaacactagggtt 561977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 104
Target Start/End: Original strand, 7768505 - 7768533
Alignment:
Q  76 actataaatataagccttgtatcagatga 104  Q
    |||||||||||||||||||||||||||||    
T  7768505 actataaatataagccttgtatcagatga 7768533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 7768559 - 7768614
Alignment:
Q  123 agggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaa 179  Q
    |||||||||||| ||||||  |||||| ||||| ||||||| |||||||||||||||    
T  7768559 agggtttagaagccaacatcaaaactaaggtttgtagagaa-ttctcttggcaacaa 7768614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 35894617 - 35894455
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  35894617 agatttgtttcagttttttaagggtttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacat 35894518  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35894517 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 35894455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 22712872 - 22712710
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  22712872 agatttgtttcagttttttaagggtttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacat 22712773  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22712772 acaaactagggtttatagagaatttctcttggcaacaactctagggttgggattgttttgatt 22712710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 30478820 - 30478982
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||    
T  30478820 agatttgttttagttttttaagggtttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagagtttagaaaccaacat 30478919  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30478920 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 30478982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 32 - 204
Target Start/End: Complemental strand, 20050388 - 20050216
Alignment:
Q  32 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 131  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  20050388 ttttcagtaaagatttgtttcagttttttaagggtttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtatag 20050289  T
Q  132 aagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||  ||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||    
T  20050288 aaaccaacatacaaactagggtttatagaaaatttctctttgcaacaactctagggttgggattgttttgatt 20050216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 12781576 - 12781415
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||    
T  12781576 agatttgtttcagttttttaagggtttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaa-cagggtttagaaaccaacat 12781478  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12781477 tcaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 12781415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 17943364 - 17943525
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||| ||||||    
T  17943364 agatttgtttcagttttttaagggtttactttccactataaatataagccttgtatcagatgataaggtgtgtagaaaat-agggtttagaagccaacat 17943462  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17943463 acaaactatggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 17943525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 32 - 202
Target Start/End: Complemental strand, 37171116 - 37170948
Alignment:
Q  32 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 131  Q
    ||||||||||||||||||| || | ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37171116 ttttcagtgaagatttgttcca-tattttaaggg-ttactttccactataaatataaaccttgtatcagatgataaagtgtgtagaaaaacagggtttag 37171019  T
Q  132 aagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttga 202  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37171018 aagccaacatacaaactagggtttatagagaatttctcttggcaacaacaccagggttgggattgttttga 37170948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 27517997 - 27517833
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgt--agaaaaacagggtttagaagtcaac 139  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||  ||||    
T  27517997 agatttgtttcagttttttaagggtttactttccactataaatataagccttgtatcaaatgataaagtgtgtgtagaaaaacagggtttagaaaccaac 27517898  T
Q  140 atacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27517897 atacaaactagggtttatagagaatttctctttgcaacaacactagggttgggattgttttgatt 27517833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 46 - 204
Target Start/End: Complemental strand, 20055117 - 20054959
Alignment:
Q  46 ttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacatacaa 145  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||    
T  20055117 ttgtttcagttttttaagggtttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtatagaaaccaacatacaa 20055018  T
Q  146 actagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  20055017 actaaggtttatagagaatttctctttgcaacaactctagggttgggattgttttgatt 20054959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 17932460 - 17932622
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    |||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||| ||  |||||    
T  17932460 agatttgtttcagttttttaagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacagggtttataaaccaaca 17932558  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17932559 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 17932622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 33674761 - 33674599
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    |||||||||||||||||||||||| ||||||||||||||||||| | | |||||||||||||||||| |||||||||||||||||||||||||  |||||    
T  33674761 agatttgtttcagttttttaagggtttactttccactataaataca-gtcttgtatcagatgataaaagtgtgtagaaaaacagggtttagaaaccaaca 33674663  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33674662 tataaactatggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 33674599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 38190816 - 38190985
Alignment:
Q  32 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 131  Q
    ||||||||||||||||||| ||  || |  | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  38190816 ttttcagtgaagatttgttccatattat--atgggttactttccactataaatataagtcttgtatcagatgataaagtgtgtagaaaa-cagggtttag 38190912  T
Q  132 aagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  38190913 aagccaacatacaaactagggtttataaataatttctcttggcaacaacactagggttgggattgttttgatt 38190985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 22717581 - 22717419
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    |||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| |||||||||  |||||    
T  22717581 agatttgtttcagttttttaagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagaaaccaaca 22717483  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||| |||||||||||||| ||||||||  ||||||||||||||||||||||    
T  22717482 tacaaactagggtttacagagaatttctcttagcaacaactatagggttgggattgttttgatt 22717419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 2740769 - 2740929
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    |||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||   |||||    
T  2740769 agatttgtttcagttttttaagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagac--caaca 2740865  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
     ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  2740866 aacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgatt 2740929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 28 - 204
Target Start/End: Original strand, 17462251 - 17462424
Alignment:
Q  28 gtatttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacaggg 126  Q
    |||||||||||| | |||||||||||||||| |||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||    
T  17462251 gtatttttcagtta-gatttgtttcagttttataagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaagg 17462348  T
Q  127 tttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||   ||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  17462349 tttagac--caacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgatt 17462424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 39686811 - 39686971
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||   |||||    
T  39686811 agatttgtttcagttttataagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagac--caaca 39686907  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
     ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  39686908 aacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgatt 39686971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 45567237 - 45567397
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||   |||||    
T  45567237 agatttgtttcagttttataagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagac--caaca 45567333  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
     ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  45567334 aacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgatt 45567397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 2736033 - 2736193
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    |||||||||||||||||||  ||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||   |||||    
T  2736033 agatttgtttcagttttttttgggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagac--caaca 2736129  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
     ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  2736130 aacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgatt 2736193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 39679873 - 39680033
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| |||||| |   |||||    
T  39679873 agatttgtttcagttttataagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaaac--caaca 39679969  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
     ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||    
T  39679970 aacaaactagggtttatagagaatctcttttggcaacaactctagggttgggattgttttgatt 39680033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 113 - 204
Target Start/End: Original strand, 33603892 - 33603982
Alignment:
Q  113 gtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaa-cactagggttgggattgttttgatt 204  Q
    ||||||||||| |||||||||   |||| ||||||||||||||||||||| ||||| |||||||||| || ||||||||||||||||||||||    
T  33603892 gtagaaaaacatggtttagaaacaaaca-acaaactagggtttatagaga-tttcttttggcaacaaacattagggttgggattgttttgatt 33603982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 45280351 - 45280290
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcaga 101  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||||||    
T  45280351 tgaagatttgtttcagttttttaagggattacttt-cactataaatatataccttgtatcaga 45280290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 204
Target Start/End: Complemental strand, 30262053 - 30261967
Alignment:
Q  117 aaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaa-cactagggttgggattgttttgatt 204  Q
    ||||||| |||||||||| ||||| |||||||| |||||||||||  ||||||||||||| || ||||||||||| |||||||||||||    
T  30262053 aaaaacatggtttagaagccaaca-acaaactacggtttatagagt-tttctcttggcaataaacactagggttgagattgttttgatt 30261967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 5377799 - 5377738
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcaga 101  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||  |||||| |||||    
T  5377799 tgaagatttgtttcagttttttaagggattacttt-cactataaatatagaccttgtttcaga 5377738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 11578378 - 11578308
Alignment:
Q  123 agggtttagaagtcaacatacaaactagggtttatagagaa--tttctcttggcaacaacactagggttggg 192  Q
    |||||||||||||||||| | |||||||||||| || ||||  |||||||||||||||| ||||||||||||    
T  11578378 agggtttagaagtcaacaaaaaaactagggtttgtatagaatttttctcttggcaacaa-actagggttggg 11578308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 25409957 - 25410118
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  25409957 agatttgtttcagttttttaagggtttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaa-cagggtttagaagccaacat 25410055  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25410056 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 25410118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 34547219 - 34547057
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  34547219 agatttgtttcagttttttaagggtttactttccactataaatataagtcttgtatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacat 34547120  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34547119 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 34547057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 25351180 - 25351341
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||    
T  25351180 agatttgtttcagttttttaagggtttactttccactataaatataagccttatatcagatgataaagtgtgtagaaaa-cagggtttagaagccaacat 25351278  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25351279 acaaactagggtttatagagaatttctcttggcaacaacactagggttgagattgttttgatt 25351341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 25356874 - 25357035
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||    
T  25356874 agatttgtttcagttttttaagggtttactttccactataaatataagccttatatcagatgataaagtgtgtagaaaa-cagggtttagaagccaacat 25356972  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25356973 acaaactagggtttatagagaatttctcttggcaacaacactagggttgagattgttttgatt 25357035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 44 - 204
Target Start/End: Complemental strand, 7464872 - 7464712
Alignment:
Q  44 atttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacatac 143  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||| ||||||||    
T  7464872 atttgtttcagttttttaagggtttactttccactataaatataagtcttgtataagatgataaagtgtgtagaaaaacagggtttaaaagccaacatac 7464773  T
Q  144 aaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7464772 aaactagggtttatagagaatttctcttggcaacaacactagggtttggattgttttgatt 7464712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 30246796 - 30246958
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||     
T  30246796 agatttgtttcagttttttaagggtttactttccactataaatataagccttgtatcagatgataaagtgtggagaaaaacagggtttagaagccaacaa 30246895  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
      ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30246896 caaaactagggtttatagagaatttctcttggcaacaacactacggttgggattgttttgatt 30246958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 32 - 204
Target Start/End: Complemental strand, 44512891 - 44512719
Alignment:
Q  32 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 131  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44512891 ttttcagtaaagatttgtttcagttttttaagggtttactttccactataaatataagccttgtataagatgataaagtgtgtagaaaaacagggtttag 44512792  T
Q  132 aagtcaacatacaaactagggtttatagagaatttctcttggcaacaacacta-gggttgggattgttttgatt 204  Q
    ||  ||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||    
T  44512791 aaaccaacatacaaactagggtttatagagaattt-tctttgcaacaacactaggggttgggattgttttgatt 44512719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 32 - 204
Target Start/End: Complemental strand, 44144229 - 44144060
Alignment:
Q  32 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 131  Q
    ||||||||||||||||||| || | ||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||| || |||||||    
T  44144229 ttttcagtgaagatttgttcca-tattttaaggg-ttactttccactataaatataagtcttgtatcagacgataaagtgtgtagaaaa-caaggtttag 44144133  T
Q  132 aagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  44144132 aagccaacatacaaactagggtttatagagaatttttcttggcaacaacactagggttatgattgttttgatt 44144060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 7069608 - 7069768
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    |||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||   |||||    
T  7069608 agatttgtttcagttttttaagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagac--caaca 7069704  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
     ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  7069705 aacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgatt 7069768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 7074615 - 7074775
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    |||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||   |||||    
T  7074615 agatttgtttcagttttttaagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagac--caaca 7074711  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
     ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  7074712 aacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgatt 7074775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 25405221 - 25405381
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    |||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||   |||||    
T  25405221 agatttgtttcagttttttaagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagac--caaca 25405317  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
     ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  25405318 aacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgatt 25405381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 70 - 204
Target Start/End: Complemental strand, 44016989 - 44016855
Alignment:
Q  70 ctttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctc 169  Q
    ||||||||||||||||||| |||||||||||||||| | |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44016989 ctttccactataaatataaaccttgtatcagatgattatgtgtgtagaaaa-cagggtttagaagccaacatacaaactagggtttatagagaatttctc 44016891  T
Q  170 ttggcaac-aacactagggttgggattgttttgatt 204  Q
    |||||||| |||||||||||||||||||||||||||    
T  44016890 ttggcaacaaacactagggttgggattgttttgatt 44016855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 3320404 - 3320244
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    ||||||||||||||||| |||||| |||||||| |||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||  ||||||    
T  3320404 agatttgtttcagttttataagggtttactttctactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga--tcaaca 3320308  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
     ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||    
T  3320307 aacaaactagggtttatagagaatctctattggcaacaactctagggttgggattgttttgatt 3320244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 3325152 - 3324992
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    ||||||||||||||||| |||||| |||||||| |||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||  ||||||    
T  3325152 agatttgtttcagttttataagggtttactttctactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga--tcaaca 3325056  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
     ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||    
T  3325055 aacaaactagggtttatagagaatctctattggcaacaactctagggttgggattgttttgatt 3324992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 8378829 - 8378698
Alignment:
Q  73 tccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctctt 171  Q
    ||||||||||||| | |||||||||||||||||||| ||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||    
T  8378829 tccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagaaaccaacatacaaactagggtttatagagaatttctctt 8378731  T
Q  172 ggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||||| |||||||||||||||||||||||    
T  8378730 ggcaacaactctagggttgggattgttttgatt 8378698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 70 - 203
Target Start/End: Complemental strand, 44011078 - 44010945
Alignment:
Q  70 ctttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctc 169  Q
    ||||||||||||||||||| |||||||||||||||| | |||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||| ||    
T  44011078 ctttccactataaatataaaccttgtatcagatgattatgtgtgtagaaaa-cagggtttagaagccaacatacaaactatggtttatagagaatttttc 44010980  T
Q  170 ttggcaac-aacactagggttgggattgttttgat 203  Q
    |||||||| ||||||||||||||||||||||||||    
T  44010979 ttggcaacaaacactagggttgggattgttttgat 44010945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 42006483 - 42006651
Alignment:
Q  32 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 131  Q
    ||||||||||||||||||| || | ||||||||| |||||||  ||||||||||||| || ||||| |||||| ||| ||||||||||||||||||||||    
T  42006483 ttttcagtgaagatttgttcca-tattttaaggg-ttactttt-actataaatataaaccgtgtataagatgaaaaa-tgtgtagaaaaacagggtttag 42006578  T
Q  132 aagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||| ||||| |||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  42006579 aagccaacaaacaaactatggtttatagaaaatttctcttggcaagaacactagggttgggattgttttgatt 42006651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 15541304 - 15541189
Alignment:
Q  88 agccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagg 186  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||   ||||| ||||||||||||||||||||||| ||||||||||||||| |||||    
T  15541304 agccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagac--caacaaacaaactagggtttatagagaatctctcttggcaacaactctagg 15541207  T
Q  187 gttgggattgttttgatt 204  Q
    ||||||||||||||||||    
T  15541206 gttgggattgttttgatt 15541189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 116 - 198
Target Start/End: Original strand, 2120798 - 2120880
Alignment:
Q  116 gaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgtt 198  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  2120798 gaaaaacaaggtttagaagccaacatacaaactagggtttatagagattttctcttggcaacaactctagggttgggattgtt 2120880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 21369543 - 21369630
Alignment:
Q  118 aaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgggattgttttgatt 204  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||| |||||||| |||||||||||||    
T  21369543 aaaacagggtttagaagccaacatacaaactagggtttatagagaaattctcttggcaacaaacattagggttgagattgttttgatt 21369630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 76 - 200
Target Start/End: Complemental strand, 6067522 - 6067399
Alignment:
Q  76 actataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggca 175  Q
    |||||||||||||  | |||||||||||| || ||||| |||||| || |||||||||| ||||| |||||||||||||||||||||| ||||||||| |    
T  6067522 actataaatataaatcctgtatcagatgaaaacgtgtgaagaaaa-catggtttagaagccaacaaacaaactagggtttatagagaa-ttctcttggta 6067425  T
Q  176 ac-aacactagggttgggattgtttt 200  Q
    || |||||||||||||||||||||||    
T  6067424 acaaacactagggttgggattgtttt 6067399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 1099696 - 1099628
Alignment:
Q  136 caacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  1099696 caacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgaaattgttttgatt 1099628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 28 - 195
Target Start/End: Original strand, 45366460 - 45366619
Alignment:
Q  28 gtatttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggt 127  Q
    ||||||||||||| ||||||||| ||  |||| |  ||||||||||  ||||||||||||| ||||||||   |||| || ||| ||||| ||||| |||    
T  45366460 gtatttttcagtgcagatttgttccaaattttaa--gggttactttt-actataaatataaaccttgtat---atgaaaacgtg-gtagataaacaaggt 45366552  T
Q  128 ttagaagtcaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgggatt 195  Q
    ||||||||||||| ||||||||| ||||||||||  ||||| |||||||| ||||||||||||| ||||    
T  45366553 ttagaagtcaaca-acaaactagagtttatagag-ttttcttttggcaacaaacactagggttgtgatt 45366619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 48457572 - 48457632
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcag 100  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||  |||||||||||    
T  48457572 tgaagatttgtttcagttttttaagggattacttt-cactataaatatagaccttgtatcag 48457632  T

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Target: chr7; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 40946247 - 40946302
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgt 95  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||    
T  40946247 tgaagatttgtttcagttttttaagggattacttt-cactataaatataaaccttgt 40946302  T

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Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 2120746 - 2120798
Alignment:
Q  41 aagatttgtttcagttttttaaggggttactttccactataaatataagccttg 94  Q
    |||||||||||||||||||||| |||||||| ||||||||||||| ||||||||    
T  2120746 aagatttgtttcagttttttaa-gggttactctccactataaatacaagccttg 2120798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 26210582 - 26210633
Alignment:
Q  144 aaactagggtttatagagaatttctcttggcaacaacactagggttgggattg 196  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||| |||||    
T  26210582 aaactagggtttgtagagaatt-ctcttggcaacaacactagggttgtgattg 26210633  T

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Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 6048890 - 6048963
Alignment:
Q  123 agggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgggattg 196  Q
    |||||||||||| ||||||  |||||||||||| || |||| ||||||||||||| ||||||||| |||||||||    
T  6048890 agggtttagaagccaacatcaaaactagggtttgtaaagaa-ttctcttggcaacaaacactaggtttgggattg 6048963  T

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Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 11081527 - 11081600
Alignment:
Q  123 agggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgggattg 196  Q
    |||||||||||| |||||   |||||||||||| ||||||| ||||||||||||| ||||||||||||| |||||    
T  11081527 agggtttagaagccaacaacaaaactagggtttgtagagaa-ttctcttggcaacaaacactagggttgagattg 11081600  T

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Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 1099761 - 1099728
Alignment:
Q  171 tggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||| |||||||||||||    
T  1099761 tggcaacaacactagggttgagattgttttgatt 1099728  T

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Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 17695207 - 17695045
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  17695207 agatttgtttcagttttttaagggtttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacat 17695108  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17695107 acaaactagggtttatagagaatttctcttggcaacaaaactagggttgggattgttttgatt 17695045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 39 - 202
Target Start/End: Complemental strand, 22352213 - 22352048
Alignment:
Q  39 tgaagatttgtttcagtttttt--aaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtc 136  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  22352213 tgaagatttgtttcagttttttttaaggggttactttccactataaatataaaccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagcc 22352114  T
Q  137 aacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttga 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22352113 aacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttga 22352048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 25466255 - 25466093
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  25466255 agatttgtttcagttttttaagggtttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacat 25466156  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  25466155 acaaactagggtttatagagaatttctcttggcaacaacactaaggttgagattgttttgatt 25466093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 39 - 204
Target Start/End: Complemental strand, 22343162 - 22342995
Alignment:
Q  39 tgaagatttgtttcagtttttt--aaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtc 136  Q
    ||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  22343162 tgaagatttgtttcagttttttttaaggggttactttcccctataaatataagccttgtatcatatgataaagtgtgtagaaaaacagggtttagaagcc 22343063  T
Q  137 aacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  22343062 aacatacaaactagggtttatagagaatctctcttggcaacaacactagggttgagattgttttgatt 22342995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 33215644 - 33215815
Alignment:
Q  32 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 131  Q
    ||||||||||||||||||| || ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  33215644 ttttcagtgaagatttgttccaatttttaaaggggttactttc-actataaatataagccttgtgtcagatgataaagtgtgtagaaaaacagagtttag 33215742  T
Q  132 aagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  33215743 aagccaacatacaaactagggtttatagagaatttctctttgcaacaacactagggttgtgattgttttgatt 33215815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 32 - 204
Target Start/End: Complemental strand, 13467827 - 13467657
Alignment:
Q  32 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 131  Q
    |||||||||||||||||||  | | ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13467827 ttttcagtgaagatttgttcta-tattttaaggg-ttactttccactataaatataagccttgtatcaaatgataaagtgtgtagaaaaacagggtttag 13467730  T
Q  132 aagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  13467729 aagccaacatacaaactagggtttatagagaatttatctttgcaacaacactagggttgggattgttttgatt 13467657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 25941471 - 25941632
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||    
T  25941471 agatttgtttcagttttttaagggtttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacatggtttagaaaccaacat 25941570  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
     |||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  25941571 tcaaactaggg-ttatagagaatttctcttggtaacaactctagggttgggattgttttgatt 25941632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 13883303 - 13883463
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    |||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||   |||||    
T  13883303 agatttgtttcagttttttaagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagac--caaca 13883399  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
     ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  13883400 aacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgatt 13883463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 31249068 - 31248908
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    |||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||   |||||    
T  31249068 agatttgtttcagttttttaagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagac--caaca 31248972  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
     ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  31248971 aacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgatt 31248908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 35201680 - 35201520
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    |||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||   |||||    
T  35201680 agatttgtttcagttttttaagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagac--caaca 35201584  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
     ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  35201583 aacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgatt 35201520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 13878555 - 13878715
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||   |||||    
T  13878555 agatttgtttcagttttataagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagac--caaca 13878651  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
     ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  13878652 aacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgatt 13878715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 16785747 - 16785907
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    |||||||||||||||||||||||| ||||||||||||||||||| | |||||||| ||||||||||| ||||||||||||||| ||||||||   |||||    
T  16785747 agatttgtttcagttttttaagggtttactttccactataaataca-gccttgtagcagatgataaaagtgtgtagaaaaacaaggtttagac--caaca 16785843  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
     ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  16785844 aacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgatt 16785907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 28 - 204
Target Start/End: Complemental strand, 26887591 - 26887418
Alignment:
Q  28 gtatttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacaggg 126  Q
    |||||||||||| | |||||||||||||||| |||||| ||||||||||||||||||| | |||||||||||||||||||| | ||||||||||||| ||    
T  26887591 gtatttttcagtta-gatttgtttcagttttataagggtttactttccactataaataca-gccttgtatcagatgataaaagcgtgtagaaaaacaagg 26887494  T
Q  127 tttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||   ||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  26887493 tttagac--caacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgatt 26887418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 91 - 204
Target Start/End: Complemental strand, 3577821 - 3577708
Alignment:
Q  91 cttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttg 190  Q
    |||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3577821 cttgtatcagatgataaagtgtgtagaaaaacagggtttaaaaaccaacatacaaactagggtttatagagaatttctctttgcaacaacactagggttg 3577722  T
Q  191 ggattgttttgatt 204  Q
    ||||||||||||||    
T  3577721 ggattgttttgatt 3577708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 64 - 204
Target Start/End: Original strand, 26643025 - 26643164
Alignment:
Q  64 gggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaa 163  Q
    |||||||||||||||||||||||||| |||||||||||||| |||  |  ||||||| || |||||||||| ||||||||||||||||||||||||||||    
T  26643025 gggttactttccactataaatataagtcttgtatcagatgagaaacagaatagaaaa-caaggtttagaagccaacatacaaactagggtttatagagaa 26643123  T
Q  164 tttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  26643124 tttctcttgcccacaacactagggttgggattgttttgatt 26643164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 64 - 204
Target Start/End: Original strand, 26748991 - 26749130
Alignment:
Q  64 gggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaa 163  Q
    |||||||||||||||||||||||||| |||||||||||||| |||  |  ||||||| || |||||||||| ||||||||||||||||||||||||||||    
T  26748991 gggttactttccactataaatataagtcttgtatcagatgagaaacagaatagaaaa-caaggtttagaagccaacatacaaactagggtttatagagaa 26749089  T
Q  164 tttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  26749090 tttctcttgcccacaacactagggttgggattgttttgatt 26749130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 71 - 204
Target Start/End: Complemental strand, 5166141 - 5166010
Alignment:
Q  71 tttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctct 170  Q
    ||||||||||||||||||| ||||||||||||||| | |||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||     
T  5166141 tttccactataaatataagtcttgtatcagatgattatgtgtgtagaaaa-cagggtttagaagccaacatacaagctagggtttatagagaatttctca 5166043  T
Q  171 tggcaacaacactagggttgggattgttttgatt 204  Q
     ||||| || ||||||||||||| ||||||||||    
T  5166042 aggcaagaatactagggttggga-tgttttgatt 5166010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 158
Target Start/End: Complemental strand, 35208915 - 35208801
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgat-aaagtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    |||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||| |||||||||||||||||| ||||||||   |||||    
T  35208915 agatttgtttcagttttttaagggtttactttccactataaata-cagccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga--ccaaca 35208819  T
Q  141 tacaaactagggtttata 158  Q
     |||||||||||||||||    
T  35208818 aacaaactagggtttata 35208801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 17035975 - 17036043
Alignment:
Q  136 caacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17035975 caacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 17036043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 19702143 - 19702056
Alignment:
Q  118 aaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgggattgttttgatt 204  Q
    |||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19702143 aaaacaaggtttagaagccaacatacaaactagcgtttatagagaatttctcttggcaacaaacactagggttgggattgttttgatt 19702056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 42 - 132
Target Start/End: Complemental strand, 30975053 - 30974963
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgat-aaagtgtgtagaaaaacagggtttaga 132  Q
    |||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||| |||||||||||||||||| ||||||||    
T  30975053 agatttgtttcagttttttaagggtttactttccactataaata-cagccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 30974963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 42 - 132
Target Start/End: Complemental strand, 30981492 - 30981402
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgat-aaagtgtgtagaaaaacagggtttaga 132  Q
    |||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||| |||||||||||||||||| ||||||||    
T  30981492 agatttgtttcagttttttaagggtttactttccactataaata-cagccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 30981402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 42 - 132
Target Start/End: Complemental strand, 30987656 - 30987566
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgat-aaagtgtgtagaaaaacagggtttaga 132  Q
    |||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||| |||||||||||||||||| ||||||||    
T  30987656 agatttgtttcagttttttaagggtttactttccactataaata-cagccttgtatcagatgataaaagtgtgtagaaaaacaaggtttaga 30987566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 12166397 - 12166340
Alignment:
Q  148 tagggtttatagagaatttctcttggcaac-aacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12166397 tagggtttatagagaatttctcttggcaacaaacactagggttgggattgttttgatt 12166340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 115 - 204
Target Start/End: Complemental strand, 24542956 - 24542868
Alignment:
Q  115 agaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaa-cactagggttgggattgttttgatt 204  Q
    ||||||| | |||||||||| |||||  ||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  24542956 agaaaaataaggtttagaagccaacac-caaactatggtttatagaga-tttctcttggcaacaaacactagggttgggattgttttgatt 24542868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 1230615 - 1230556
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatca 99  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||||    
T  1230615 tgaagatttgtttcagttttttaagggattacttt-cactataaatatagaccttgtatca 1230556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 26064929 - 26064988
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatca 99  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||||    
T  26064929 tgaagatttgtttcagttttttaagggattacttt-cactataaatatagaccttgtatca 26064988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 26084898 - 26084957
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatca 99  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||||    
T  26084898 tgaagatttgtttcagttttttaagggattacttt-cactataaatatagaccttgtatca 26084957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 16455696 - 16455627
Alignment:
Q  123 agggtttagaagtcaacatacaaactagggtttatagaga-atttctcttggcaac-aacactagggttg 190  Q
    |||||||||||||||||| | |||||||||||| || |||  |||||||||||||| |||||||||||||    
T  16455696 agggtttagaagtcaacacaaaaactagggtttgtacagagttttctcttggcaacgaacactagggttg 16455627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 200
Target Start/End: Original strand, 7293834 - 7293920
Alignment:
Q  113 gtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaa-cactagggttgggattgtttt 200  Q
    ||||||||| |||||||| |||  |||| ||||||||||||| ||||||| |||||||||| || || |||||||||||| ||||||||    
T  7293834 gtagaaaaatagggtttaaaagcaaaca-acaaactagggttcatagaga-tttctcttggtaagaaacactagggttggtattgtttt 7293920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 28241688 - 28241626
Alignment:
Q  39 tgaagatttgtttcagtttttt-aaggggttactttccactataaatataagccttgtatcaga 101  Q
    |||| ||||||||||||||||| ||||| |||||||| ||||||||||||  ||||||||||||    
T  28241688 tgaaaatttgtttcagtttttttaagggattactttc-actataaatatagaccttgtatcaga 28241626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 30445562 - 30445633
Alignment:
Q  125 ggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgggattg 196  Q
    |||||||||| ||||||  |||||||||||| |||| || ||||||||||||| ||||||| ||||| |||||    
T  30445562 ggtttagaagccaacattaaaactagggtttgtagataa-ttctcttggcaacaaacactacggttgagattg 30445633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 9526292 - 9526454
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  9526292 agatttgtttcagttttttaagggtttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacat 9526391  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9526392 acaaactagggtttatagagaatttctcttggcaacaactctagggttgggattgttttgatt 9526454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 21353702 - 21353540
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21353702 agatttgtttcagttttttaagggttttctttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagccaacat 21353603  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21353602 acaaactagggtttatagagaatttctcttggtaacaacactagggttgggattgttttgatt 21353540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 25133890 - 25134059
Alignment:
Q  32 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 131  Q
    ||||||||||||||||||| || | ||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||    
T  25133890 ttttcagtgaagatttgttcca-tattttaaggg-ttactttccactataaatataagtcttgtatcagatgataaaatgtgtagaaaa-cagggtttag 25133986  T
Q  132 aagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  25133987 aagccaacatacaaactagggtttatagagaatttctcttggcaacaacactatggttgtgattgttttgatt 25134059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 9521542 - 9521703
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    |||||||||||||||||||||||| |||||||| |||||||||| | |||||||||||||||||||| ||||||||||||||| |||||||||  |||||    
T  9521542 agatttgtttcagttttttaagggtttactttc-actataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagaaaccaaca 9521639  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||||||||||||||||||||||||||||| ||||   |||||||||||||||||||||||    
T  9521640 tacaaactagggtttatagagaatttctcttggtaacatttctagggttgggattgttttgatt 9521703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 2232425 - 2232585
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||   |||||    
T  2232425 agatttgtttcagttttataagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagac--caaca 2232521  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
     ||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||    
T  2232522 aacaaactagggtttatagagaatctctcttggcaacaactttagggttgggattgttttgatt 2232585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 28 - 204
Target Start/End: Complemental strand, 2393649 - 2393476
Alignment:
Q  28 gtatttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggt 127  Q
    ||||||||||||||||||||||| || | ||||||||| | | |||||||||||||||||||||||||||||||||| |||  | |||||||| || |||    
T  2393649 gtatttttcagtgaagatttgttcca-tattttaagggat-attttccactataaatataagccttgtatcagatgaaaaacagagtagaaaa-caaggt 2393553  T
Q  128 ttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||| |||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2393552 ttagaagccaacatgcaaactaaggtttatagagaatttctcttggcaataacactagggttgggattgttttgatt 2393476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 70 - 204
Target Start/End: Complemental strand, 3091433 - 3091300
Alignment:
Q  70 ctttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctc 169  Q
    ||||||||||||||||||| |||||||||||||||  | |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3091433 ctttccactataaatataa-ccttgtatcagatgaatatgtgtgtagaaaa-cagggtttagaagccaacatacaaactagggtttatagagaatttctc 3091336  T
Q  170 ttggcaac-aacactagggttgggattgttttgatt 204  Q
    |||| ||| ||||||||||||| |||||||||||||    
T  3091335 ttggtaacaaacactagggttgagattgttttgatt 3091300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 4144963 - 4144877
Alignment:
Q  118 aaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  4144963 aaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaaaaacactagggttgagattgttttgatt 4144877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 106 - 200
Target Start/End: Original strand, 14996931 - 14997024
Alignment:
Q  106 aaagtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaa-caacactagggttgggattgtttt 200  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||| ||||||||| ||  |||||||||||||||||||||||    
T  14996931 aaagtgtgtagaaaa-cagggtttagaagccaacaaacaaactagggtttataaagaa-ttctcttggtaataaacactagggttgggattgtttt 14997024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 46783010 - 46783131
Alignment:
Q  82 aatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaac-aac 180  Q
    ||||||| ||||||||||||||| || ||  ||||||||| |||||||||||| ||||| |||||||| ||||||||||||| || |||| ||||| |||    
T  46783010 aatataaaccttgtatcagatgaaaatgta-gtagaaaaatagggtttagaagccaacaaacaaactatggtttatagagaa-ttatctttgcaacaaac 46783107  T
Q  181 actagggttgggattgttttgatt 204  Q
    |||||||||| ||| |||||||||    
T  46783108 actagggttgagatcgttttgatt 46783131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 2401468 - 2401415
Alignment:
Q  151 ggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2401468 ggtttatagagaatttctcttggcaacaacactagggttgagattgttttgatt 2401415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 2401563 - 2401489
Alignment:
Q  28 gtatttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatga 104  Q
    ||||||||||||||||||||||| || | ||||||||| | ||||||||||||||||||||||||||||||||||||    
T  2401563 gtatttttcagtgaagatttgttcca-tattttaagggat-actttccactataaatataagccttgtatcagatga 2401489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 13449916 - 13449856
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcag 100  Q
    ||||||||||||||||||||||||||| | ||||| |||||||||||||  |||||||||||    
T  13449916 tgaagatttgtttcagttttttaagggataacttt-cactataaatatagaccttgtatcag 13449856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 4145028 - 4144979
Alignment:
Q  70 ctttccactataaatataagccttgtatcagatgataaagtgtgtagaaa 119  Q
    ||||||||||||||||||| |||||||||||||||| | || ||||||||    
T  4145028 ctttccactataaatataaaccttgtatcagatgattatgtatgtagaaa 4144979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 2617431 - 2617490
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcaga 101  Q
    ||||||||||||||||||||||||||| |  |||| |||||||||||||  ||||||||||||    
T  2617431 tgaagatttgtttcagttttttaagggat--cttt-cactataaatatagaccttgtatcaga 2617490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 42238120 - 42238291
Alignment:
Q  32 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 131  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  42238120 ttttcagtgaagatttgtttcaattttttaaagggttactttccactataaatataaaccttgtatca-atgataaagtgtgtagaaaaacagggtttag 42238218  T
Q  132 aagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42238219 aagccaacatacaaactagggtttatagagaatttctctttgcaacaacactagggttgggattgttttgatt 42238291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 39 - 204
Target Start/End: Original strand, 1240251 - 1240416
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaa 138  Q
    |||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1240251 tgaacatttgtttcagttttttaagaggttactttctactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagccaa 1240350  T
Q  139 catacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||    
T  1240351 catacaaactagggtttatagatattttctctttgcaacaacactagggttgggattgttttgatt 1240416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 22672658 - 22672822
Alignment:
Q  42 agatttgtttcagtttt--ttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaac 139  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  22672658 agatttgtttcagttttttttaagggtttactttccactataaatagaagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaaaccaac 22672757  T
Q  140 atacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22672758 atacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 22672822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 40222580 - 40222751
Alignment:
Q  32 ttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttag 131  Q
    ||||||||||| |||||||||| |||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40222580 ttttcagtgaaaatttgtttcaattttttaaaggattactttc-actataaatataagccttgtatcagatgataaagtgtgtagaaaaacaaggtttag 40222678  T
Q  132 aagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40222679 aagccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgagattgttttgatt 40222751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 43 - 204
Target Start/End: Complemental strand, 35385807 - 35385646
Alignment:
Q  43 gatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacata 142  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||   ||||||    
T  35385807 gatttgtttcagttttttaagggtttactttccactataaatataagccttgtatcaaatgataaagtgtgtagaaaaacaaagtttagaaactaacata 35385708  T
Q  143 caaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35385707 caaactagggtttatagagaatttctcttggcaacaactctagggttgggattgttttgatt 35385646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 25452321 - 25452483
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    |||||||||||||||||||||||| ||||||||||||||||||| | ||||||||| |||||||||| ||||||||||||||| |||||||||  |||||    
T  25452321 agatttgtttcagttttttaagggtttactttccactataaataca-gccttgtattagatgataaaagtgtgtagaaaaacaaggtttagaaaccaaca 25452419  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  25452420 tacaaactagggtttatagagaatttctcttggcaacaactctagcgttgggattgttttgatt 25452483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 2298357 - 2298195
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    |||||||||| ||||||||||||| ||||||||||||||||||| | ||||||||||| |||||||| ||||||||||||||| |||||||||  |||||    
T  2298357 agatttgttttagttttttaagggtttactttccactataaataca-gccttgtatcatatgataaaagtgtgtagaaaaacaaggtttagaaaccaaca 2298259  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  2298258 tacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgatt 2298195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 25445318 - 25445480
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    |||||||||||||||||||||||| |||| |||||||||||||| | | |||||||||||||||||| ||||||||| ||||| |||||||||  |||||    
T  25445318 agatttgtttcagttttttaagggtttaccttccactataaataca-gtcttgtatcagatgataaaagtgtgtagataaacaaggtttagaaaccaaca 25445416  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25445417 tacaaactagggtttatagagaatttctcttggcaacaactctagggttgggattgttttgatt 25445480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 1170639 - 1170799
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    ||||||||||||||||| |||||| |||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||   |||||    
T  1170639 agatttgtttcagttttataagggtttactttctactataaatata-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagac--caaca 1170735  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
     ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  1170736 aacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgatt 1170799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 34 - 204
Target Start/End: Complemental strand, 17841611 - 17841443
Alignment:
Q  34 ttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaa 133  Q
    ||||||||||||||||| || | ||||||||| ||| |||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||    
T  17841611 ttcagtgaagatttgttcca-tattttaaggg-ttaatttccactataaatataagccttgtatcggatgataaagtgcgtagaaaa-cagggtttagaa 17841515  T
Q  134 gtcaacatacaaactagggtttatagagaatttctcttggc-aacaacactagggttgggattgttttgatt 204  Q
      || |||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||    
T  17841514 accatcatacaaactagggtttatagagaatttctcttggcaaacaatactagggttgagattgttttgatt 17841443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 70 - 200
Target Start/End: Original strand, 10627217 - 10627347
Alignment:
Q  70 ctttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctc 169  Q
    ||||||||||||||||||||||||||||||||| || | |||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  10627217 ctttccactataaatataagccttgtatcagattattatgtgtgtagaaaa-cagggtttagaagccaacatacaaactagtgtttatagagaatttctc 10627315  T
Q  170 ttggcaac-aacactagggttgggattgtttt 200  Q
    || ||||| |||||||||||| ||||||||||    
T  10627316 ttagcaacaaacactagggttaggattgtttt 10627347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 70 - 204
Target Start/End: Complemental strand, 11962759 - 11962627
Alignment:
Q  70 ctttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctc 169  Q
    ||||||||||||||||||| |||||||||| |||| | | ||||||||||| ||||||||||||| |||||||||||||| |||| ||||||||||||||    
T  11962759 ctttccactataaatataaaccttgtatcatatga-atattgtgtagaaaa-cagggtttagaagccaacatacaaactatggttcatagagaatttctc 11962662  T
Q  170 ttggcaacaacactagggttgggattgttttgatt 204  Q
    ||||||||||||||||||||| |||||||||||||    
T  11962661 ttggcaacaacactagggttgagattgttttgatt 11962627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 71 - 204
Target Start/End: Complemental strand, 16093617 - 16093484
Alignment:
Q  71 tttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctct 170  Q
    |||||||||||||||||  |||||||||| || || | |||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  16093617 tttccactataaatatataccttgtatcaaataattatgtgtgtagaaaa-cagggtttagaagccaacatacaaactagggtttatagataatttctct 16093519  T
Q  171 tggcaac-aacactagggttgggattgttttgatt 204  Q
    ||||||| |||||||||||||||||  ||||||||    
T  16093518 tggcaacaaacactagggttgggatctttttgatt 16093484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 31782738 - 31782651
Alignment:
Q  118 aaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgggattgttttgatt 204  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  31782738 aaaacagggtttagaagccaacatacaaactagggtttatagataatttctcttggcaacaaacactagggttgggattgttttgatt 31782651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 75 - 204
Target Start/End: Complemental strand, 26406795 - 26406667
Alignment:
Q  75 cactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggc 174  Q
    ||||||||||| || |||||||||| |||| || |||||||||||| ||||||||||||  ||||| |||||||||||||||||||||| ||||||||||    
T  26406795 cactataaatagaaaccttgtatcatatgaaaatgtgtgtagaaaa-cagggtttagaaaccaacaaacaaactagggtttatagagaa-ttctcttggc 26406698  T
Q  175 aac-aacactagggttgggattgttttgatt 204  Q
    ||| ||||||||||||| |||||||||||||    
T  26406697 aacaaacactagggttgagattgttttgatt 26406667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 99 - 204
Target Start/End: Original strand, 28786289 - 28786392
Alignment:
Q  99 agatgataaagtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgtt 198  Q
    |||||| || ||| ||||||||||||| |||||||| |||||||||||| |||| ||||| |||| ||||||| ||||||||||||||||||| ||||||    
T  28786289 agatgaaaaggtgcgtagaaaaacaggatttagaaggcaacatacaaacaaggg-ttataaagaacttctctt-gcaacaacactagggttggaattgtt 28786386  T
Q  199 ttgatt 204  Q
    ||||||    
T  28786387 ttgatt 28786392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 204
Target Start/End: Original strand, 25837970 - 25838095
Alignment:
Q  78 tataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaac 177  Q
    ||||||| ||| | |||||||| |||| || |||||||||||| || |||||||||| ||||| | |||||| ||||||||||||| ||||||||| |||    
T  25837970 tataaatttaaactttgtatcatatgaaaacgtgtgtagaaaa-caaggtttagaagccaacaaagaaactatggtttatagagaa-ttctcttggtaac 25838067  T
Q  178 -aacactagggttgggattgttttgatt 204  Q
     ||||||||||||| |||||||||||||    
T  25838068 aaacactagggttgagattgttttgatt 25838095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 4409970 - 4410031
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcaga 101  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||||||    
T  4409970 tgaagatttgtttcagttttttaagggattacttt-cactataaatatagaccttgtatcaga 4410031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 6747217 - 6747278
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcaga 101  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||||||    
T  6747217 tgaagatttgtttcagttttttaagggattacttt-cactataaatatagaccttgtatcaga 6747278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 39854397 - 39854458
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcaga 101  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||||||    
T  39854397 tgaagatttgtttcagttttttaagggattacttt-cactataaatatagaccttgtatcaga 39854458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 6744975 - 6745035
Alignment:
Q  40 gaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcaga 101  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||||||    
T  6744975 gaagatttgtttcagttttttaagggattacttt-cactataaatatagaccttgtatcaga 6745035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 10529465 - 10529404
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcaga 101  Q
    ||||||||| ||||||||||||||||| ||||||| |||||||||||||  ||||||||||||    
T  10529465 tgaagatttatttcagttttttaagggattacttt-cactataaatatagaccttgtatcaga 10529404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 196
Target Start/End: Original strand, 13294680 - 13294763
Alignment:
Q  113 gtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaa-cactagggttgggattg 196  Q
    ||||||||||| || ||| |||||||||   ||||||| |||| ||||||| ||||||||||||||| |||||||||||||||||    
T  13294680 gtagaaaaacaaggattaaaagtcaacaacaaaactagagtttgtagagaa-ttctcttggcaacaagcactagggttgggattg 13294763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 29748357 - 29748430
Alignment:
Q  123 agggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgggattg 196  Q
    |||||||||||| |||||   |||||||||||| ||||||| ||||||||||||| |||| ||||||| ||||||    
T  29748357 agggtttagaagccaacaagaaaactagggtttgtagagaa-ttctcttggcaacaaacagtagggttaggattg 29748430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 35430177 - 35430250
Alignment:
Q  123 agggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaa-caacactagggttgggattg 196  Q
    |||||||||||||||||||  |||||||||||| || ||  |||||||||||||  |||||||||||| ||||||    
T  35430177 agggtttagaagtcaacatcaaaactagggtttgtacag-ttttctcttggcaataaacactagggtttggattg 35430250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 2144835 - 2144761
Alignment:
Q  123 agggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaaca--acactagggttgggattg 196  Q
    |||||||||||| |||||   |||||||||||| |||||  || ||||||||||||  ||||||||||||||||||    
T  2144835 agggtttagaagccaacactaaaactagggtttgtagag-tttgctcttggcaacaacacactagggttgggattg 2144761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 42 - 201
Target Start/End: Complemental strand, 17342 - 17183
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaagtgtgtagaaaaacagggtttagaagtcaacat 141  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||    
T  17342 agatttgtttcagttttttaagggtttactttccactataaatataagccttgtatcagatgataaagagtgtagaaaaacagggtttagaaaccaacat 17243  T
Q  142 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17242 acaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttg 17183  T

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Target: scaffold0256 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 16151 - 16313
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    |||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  16151 agatttgtttcagttttttaagggtttactttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacagggtttagaagccaaca 16249  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16250 ttcaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 16313  T

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Target: scaffold0131 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 30941 - 31129
Alignment:
Q  13 agatgaaaatgaattgtatttttcagtgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtg 111  Q
    |||| ||||| || ||||||||||||| | |||||||||||||||| |||||| ||||||||||||||||||| | |||||||||||||||||||| |||    
T  30941 agataaaaataaaatgtatttttcagtta-gatttgtttcagttttataagggtttactttccactataaataca-gccttgtatcagatgataaaagtg 31038  T
Q  112 tgtagaaaaacagggtttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
    |||||||||||| ||||||||   ||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  31039 tgtagaaaaacaaggtttagac--caacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgatt 31129  T

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Target: scaffold0006 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 224647 - 224807
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    |||||||||||||||||||||||| || |||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||   |||||    
T  224647 agatttgtttcagttttttaagggttttctttccactataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagac--caaca 224743  T
Q  141 tacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgatt 204  Q
     ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  224744 aacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgatt 224807  T

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Target: scaffold1764 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold1764
Description:

Target: scaffold1764; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 42 - 171
Target Start/End: Original strand, 1262 - 1391
Alignment:
Q  42 agatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcagatgataaa-gtgtgtagaaaaacagggtttagaagtcaaca 140  Q
    ||||||||||||||||||| |||| |||||||||| |||||||| | |||||||||||||||||||| ||||||||||||||| |||||||||  |||||    
T  1262 agatttgtttcagttttttgagggtttactttccaatataaataca-gccttgtatcagatgataaaagtgtgtagaaaaacaaggtttagaaaccaaca 1360  T
Q  141 tacaaactagggtttatagagaatttctctt 171  Q
    |||||||||||||||||||||||||||||||    
T  1361 tacaaactagggtttatagagaatttctctt 1391  T

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Target: scaffold0552 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 1197 - 1136
Alignment:
Q  39 tgaagatttgtttcagttttttaaggggttactttccactataaatataagccttgtatcaga 101  Q
    ||||||||||||||| ||| ||||||| ||||||| |||||||||||||  ||||||||||||    
T  1197 tgaagatttgtttcaatttgttaagggattacttt-cactataaatatagaccttgtatcaga 1136  T

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Target: scaffold0038 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 41850 - 41788
Alignment:
Q  39 tgaagatttgtttcagtttttt-aaggggttactttccactataaatataagccttgtatcaga 101  Q
    |||| ||||||||||||||||| ||||| |||||||| ||||||||||||  ||||||||||||    
T  41850 tgaaaatttgtttcagtttttttaagggattactttc-actataaatatagaccttgtatcaga 41788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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