View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14506_low_54 (Length: 206)
Name: NF14506_low_54
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 109; Significance: 5e-55; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 6610141 - 6609965
Alignment:
| Q |
14 |
caaaggacaattatagtggctctgccactc--aataaaaactattgtaacaactaacaagtgnnnnnnnnnnnnnnnnnnnctataaattatttcagctt |
111 |
Q |
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| T |
6610141 |
caaaggacaattatagtggctctgccactctcaataaaaactattgtaacaactaacaagtgttttttttttcttt-----ctataaattatttcagctt |
6610047 |
T |
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| Q |
112 |
acagcttattgtcacacacaattctaattatgtttgttaaactcaacaaattttaacttccctttgttgtcatcatagtttc |
193 |
Q |
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| T |
6610046 |
acagcttattgtcacacacaattctaattatgtttgttaaactcaacaaattttaacttccctttgttgtcatcatagtttc |
6609965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 6602588 - 6602531
Alignment:
| Q |
16 |
aaggacaattatagtggctctgccactcaataaaaactattgtaacaactaacaagtg |
73 |
Q |
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||||||||| |||||||||||||||||| ||||||||||| |||||| ||||||||| |
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| T |
6602588 |
aaggacaatcatagtggctctgccactctataaaaactatgttaacaattaacaagtg |
6602531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 148
Target Start/End: Complemental strand, 6602517 - 6602462
Alignment:
| Q |
93 |
ctataaattatttcagcttacagcttattgtcacacacaattctaattatgtttgt |
148 |
Q |
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| T |
6602517 |
ctataaattgtttcagcttacaacttattgtcacacaaagttctaattaagtttgt |
6602462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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