View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14506_low_6 (Length: 586)
Name: NF14506_low_6
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 509; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Complemental strand, 37793138 - 37792570
Alignment:
| Q |
1 |
tgtccaagaatattcactcacagtctctatgaatgcatccataaccggaagttcactgccatcaaaaactgaattttcatgtgatatagtggaagcgaaa |
100 |
Q |
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||||||| || |||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37793138 |
tgtccaaaaaaattcactcacagtctccatgaatgcatccataaacggaagttcactaccatcaaaaactgaattttcatgtgatatagtggaagcgaaa |
37793039 |
T |
|
| Q |
101 |
ttttctgttgttatgcaagagaatccacttgaaaatggttgcgaagattgtggactcgtaatattgggatcgatgttgttctcaaaaactccttcaagtt |
200 |
Q |
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| T |
37793038 |
ttttctgttgttatgcaagagaatccacttgaaaatggttgtgaagatagtggactcgtaatattgggatcgatattgttctcaaaaactccttcaagtt |
37792939 |
T |
|
| Q |
201 |
tcttggtttcatccattgtagggtgattatgggggacatatgaattgtctatcatatatggctctgtccagaaactctcactaaaattgtccatgtatgt |
300 |
Q |
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| T |
37792938 |
tcttggtttcttccattgtagggtgattatgggggacatatgaattgtctatcatatatggctctgtccagaaattctcactaaaattctccatgtatgt |
37792839 |
T |
|
| Q |
301 |
ttccataaaagaaaggtcattatcatcaagaattgcattgtccattgttatgcaagacaattcgcttgaagatggttgtggagatatttgatttgcaata |
400 |
Q |
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| T |
37792838 |
ttccataaaagaaaggtcattatcatcaagaattgcattgtccattgttatgcaagacaattcgcttgaagatggttgcggagatatttgatttgcaata |
37792739 |
T |
|
| Q |
401 |
ttaggatcattgttgttctctaaaactccttcaaatttcttaggttcttccaatgtagggtgattatttgaatttgaatcttttgctattctcgttccac |
500 |
Q |
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| T |
37792738 |
ttaggatcattgttgctctctaaaactacttcaaatttcttaggttcttccaatgtagggtgattatttgaatttgaatcttttgctattctcgttccac |
37792639 |
T |
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| Q |
501 |
gtttagacttgatattctttacaaaacgcttcttcaaggtagtgtgccagtgattctttatctcattat |
569 |
Q |
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| T |
37792638 |
gtttcgacttgatattctttacaaaacgcttcttcaaggtagtgtgccagtgattctttatctcattat |
37792570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 73 - 335
Target Start/End: Complemental strand, 37793534 - 37793272
Alignment:
| Q |
73 |
attttcatgtgatatagtggaagcgaaattttctgttgttatgcaagagaatccacttgaaaatggttgcgaagattgtggactcgtaatattgggatcg |
172 |
Q |
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| T |
37793534 |
attttcatgtgatattgtggaagtaacattttccattgttattgaagagaatccatttgatgatggttgtgaagatactggactaacactattgggatca |
37793435 |
T |
|
| Q |
173 |
atgttgttctcaaaaactccttcaagtttcttggtttcatccattgtagggtgattatgggggacatatgaattgtctatcatatatggctctgtccaga |
272 |
Q |
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| T |
37793434 |
atgttgtactcaaaaactccttcaattttcttggcttcttccattgtaaggtgattacgaaggaaatgtgaactgtcaatcatatatggctctgaccaga |
37793335 |
T |
|
| Q |
273 |
aactctcactaaaattgtccatgtatgtttccataaaagaaaggtcattatcatcaagaattg |
335 |
Q |
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| T |
37793334 |
aattctcactcaaattctctatgtatgcatccataaaatgaaggtcattgtcatcaagaattg |
37793272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 394 - 467
Target Start/End: Complemental strand, 37793246 - 37793173
Alignment:
| Q |
394 |
tgcaatattaggatcattgttgttctctaaaactccttcaaatttcttaggttcttccaatgtagggtgattat |
467 |
Q |
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| T |
37793246 |
tgcagtattaggattattgttgttctctaaaactccttcaaatttattggcttcttccaatgtagggtgcttat |
37793173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 174 - 270
Target Start/End: Complemental strand, 37793229 - 37793133
Alignment:
| Q |
174 |
tgttgttctcaaaaactccttcaagtttcttggtttcatccattgtagggtgattatgggggacatatgaattgtctatcatatatggctctgtcca |
270 |
Q |
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| T |
37793229 |
tgttgttctctaaaactccttcaaatttattggcttcttccaatgtagggtgcttatatggggaataggaagtgtctatcatatatggctctgtcca |
37793133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 228
Target Start/End: Complemental strand, 37809388 - 37809272
Alignment:
| Q |
112 |
tatgcaagagaatccacttgaaaatggttgcgaagattgtggactcgtaatattgggatcgatgttgttctcaaaaactccttcaagtttcttggtttca |
211 |
Q |
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| T |
37809388 |
tatgcaagaggatgcacttgtagatggttgtgaagatggtggactcgtaatattgaaatcactgttgttctctaacatttctccaagtttcttgggtttt |
37809289 |
T |
|
| Q |
212 |
tccattgtagggtgatt |
228 |
Q |
| |
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| T |
37809288 |
tccattgtagggtgatt |
37809272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 406 - 504
Target Start/End: Complemental strand, 37809331 - 37809233
Alignment:
| Q |
406 |
atcattgttgttctctaaaactccttcaaatttcttaggttcttccaatgtagggtgattatttgaatttgaatcttttgctattctcgttccacgttt |
504 |
Q |
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|||| ||||||||||||| | | || ||| |||||| |||| ||||| |||||||||||| ||||||||||| ||||| ||| || ||||||||||||| |
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| T |
37809331 |
atcactgttgttctctaacatttctccaagtttcttgggtttttccattgtagggtgattttttgaatttgagtctttggcttttttcgttccacgttt |
37809233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 466
Target Start/End: Complemental strand, 37793508 - 37793378
Alignment:
| Q |
336 |
cattgtccattgttatgcaagacaattcgcttgaagatggttgtggagatatttgatttgcaatattaggatcattgttgttctctaaaactccttcaaa |
435 |
Q |
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| T |
37793508 |
cattttccattgttattgaagagaatccatttgatgatggttgtgaagatactggactaacactattgggatcaatgttgtactcaaaaactccttcaat |
37793409 |
T |
|
| Q |
436 |
tttcttaggttcttccaatgtagggtgatta |
466 |
Q |
| |
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|||||| | |||||||| |||| |||||||| |
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| T |
37793408 |
tttcttggcttcttccattgtaaggtgatta |
37793378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 37809533 - 37809493
Alignment:
| Q |
234 |
ggacatatgaattgtctatcatatatggctctgtccagaaa |
274 |
Q |
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| T |
37809533 |
ggacatataaactgtctattatatatggctctgtccagaaa |
37809493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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