View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14506_low_7 (Length: 584)
Name: NF14506_low_7
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_low_7 |
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| [»] scaffold0026 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 528; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 20 - 575
Target Start/End: Original strand, 25802304 - 25802859
Alignment:
| Q |
20 |
aacgggtttgtttaccactgcaaatcctgtgggttcgacctccacccatgttgcgcgaagctgccgatggttcttaacgatggggaaatgaaactttacc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802304 |
aacgggtttgtttaccactgcaaatcctgtgggttcgacctccacccatgttgcgcgaagctgccgatggttcttaacgatggggaaatgaaactttacc |
25802403 |
T |
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| Q |
120 |
ttcacaggaaagtgagttcaccatgtcaccgttgcggaagaaaaggacgtagttggagttatagatcgaactgtaagagttacaatttgcatgtggcttg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25802404 |
ttcacaggaaagtgagttcaccatgtcaccgttgcggaagaaaaggacgtagctggagttatagatcgaactgtaagagttacaatttgcatgtggcctg |
25802503 |
T |
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| Q |
220 |
tgtgagggaaatgctggtggaaaattggtacaacttatatatgggacatggtaaaggaagtagcgggaaacttgacgccactagtcctagtttacagaat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||| |
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| T |
25802504 |
tgtgagggaaatgctggtggaaaattggtacaacttatatatgggacatggtaaaggaagtagcaggaaacttgaggccactattcctagtttacagaat |
25802603 |
T |
|
| Q |
320 |
acattgtacgctgcacataattgcagaggaagtagaggaagtaaaggaaagaaggtgaaaaagtgttgtgagattgctggatttgcggtgcagattgtga |
419 |
Q |
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| T |
25802604 |
acattgtacgctgcacataattgcagaggaagtagaggaagtaaaggaaagaaggtgaaaaagtgttgtgagattgctggatttgcggtgcagattgtga |
25802703 |
T |
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| Q |
420 |
tttcagctgttttgggtgatcctacgactctcattgctggtgttgttggggcactcatgtctagggcttgaatatcatggaacataacagaatctatctt |
519 |
Q |
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| T |
25802704 |
tttcagcggttttgggtgatcctacgactctcattgctggtgttgttggggcactcatgtctagggcttgaatatcatggaatataacagaatctatctt |
25802803 |
T |
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| Q |
520 |
ttgtcttttgttgtgacgtgtatgttagttttgtttagtaccacatgatgatgatg |
575 |
Q |
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| T |
25802804 |
ttgtcttttgttgtgacgtgtatgttagttttgtttagtaccacatgatgatgatg |
25802859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 101 - 280
Target Start/End: Original strand, 25816435 - 25816607
Alignment:
| Q |
101 |
ggggaaatgaaactttaccttcacaggaaagtgagttcaccatgtcaccgttgcggaagaaaaggacgtagttggagttatagatcgaactgtaagagtt |
200 |
Q |
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| T |
25816435 |
ggggaaatgaaactttacctttatagaaaagtgagttcaccatgtcaccgttgtggaagaaaaggacgtagctggagttataggtc---------gagtt |
25816525 |
T |
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| Q |
201 |
acaatttgcatgtggcttgtgt--gagggaaatgctggtggaaaattggtacaacttatatatgggacatggtaaaggaagt |
280 |
Q |
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| T |
25816526 |
acaatttgcatgttgcttgtgttatagggaaatgttggtggagaattggctcaatttatatatggaacatggtaaaggaagt |
25816607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 25816372 - 25816430
Alignment:
| Q |
20 |
aacgggtttgtttaccactgcaaatcctgtgggttcgacctccacccatgttgcgcgaa |
78 |
Q |
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| T |
25816372 |
aacgggtttgtataccactgcaaatcatgtggatttgacctccacccatgttgcgcgaa |
25816430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 327 - 575
Target Start/End: Complemental strand, 105845 - 105595
Alignment:
| Q |
327 |
acgctgcacataattgcagaggaagtagaggaagtaaaggaaagaaggtgaaaaa--gtgttgtgagattgctggatttgcggtgcagattgtgatttca |
424 |
Q |
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| T |
105845 |
acgctgcacataattgcagaggaagtagaggaagtaaaggaaagaaggtgaaaaaaagtgttgtgagattgctggatttgcggtgcagattgtgatttca |
105746 |
T |
|
| Q |
425 |
gctgttttgggtgatcctacgactctcattgctggtgttgttggggcactcatgtctagggcttgaatatcatggaacataacagaatctatcttttgtc |
524 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
105745 |
gcggttttgggtgatcctacgactctcattgctggtgttgttggggcgctcatgtctagggcttgaatatcatggaacataacagaatctatcttttgtc |
105646 |
T |
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| Q |
525 |
ttttgttgtgacgtgtatgttagttttgtttagtaccacatgatgatgatg |
575 |
Q |
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| T |
105645 |
ttttgttgtgacgtgtatgttagttttgtttagtaccacatgatgatgatg |
105595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 139 - 332
Target Start/End: Complemental strand, 108813 - 108620
Alignment:
| Q |
139 |
accatgtcaccgttgcggaagaaaaggacgtagttggagttatagatcgaactgtaagagttacaatttgcatgtggcttgtgtgagggaaatgctggtg |
238 |
Q |
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||||||||||||||| || ||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
108813 |
accatgtcaccgttgtgggagaaaagcacgtagctggagttatagatcgaactgtaagagttacaatttacatgtggcttgtgtgagggaaatgctggtg |
108714 |
T |
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| Q |
239 |
gaaaattggtacaacttatatatgggacatggtaaaggaagtagcgggaaacttgacgccactagtcctagtttacagaatacattgtacgctg |
332 |
Q |
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| T |
108713 |
gaaaattggtacaacttatatatgggacatggtaaaggaagtagcaggaaacttgaggccattattcctagtttacagaatacattgtacgctg |
108620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 112227 - 112104
Alignment:
| Q |
20 |
aacgggtttgtttaccactgcaaatcctgtgggttcgacctccacccatgttgcgcgaagctgccgatggttcttaacgatggggaaatgaaactttacc |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
112227 |
aacgggtttgtttaccactgcaaatcctgtgggttcgacctccacccgtgttgcgcaaagctgccgatggttcttaacgacggggaaatgaaactttacc |
112128 |
T |
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| Q |
120 |
ttcacaggaaagtgagttcaccat |
143 |
Q |
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|| ||||||||||||||||||||| |
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| T |
112127 |
tttacaggaaagtgagttcaccat |
112104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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