View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14506_low_9 (Length: 568)
Name: NF14506_low_9
Description: NF14506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14506_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 17 - 537
Target Start/End: Original strand, 51706269 - 51706793
Alignment:
| Q |
17 |
ataatttccgtgtccgaggggataaagagaaacataaaacgacccaaatggtttgggctcaaatacaactggggtgggccttgaatatttacaaaaaggt |
116 |
Q |
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| T |
51706269 |
ataatttccgtgtccgaggggataaagagaaacataacacgacccaaatggtttgggctcaaatacaactggggtgggccttgaatatttacaaaaaggt |
51706368 |
T |
|
| Q |
117 |
taatttgggaattacaaaaaatccaggagataaaacgataagggagggataagagtctaaga----aaggagaaaccgcgacagagaattgaagagagaa |
212 |
Q |
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| T |
51706369 |
taatttgggaattacaaaaaatccaggagataaaacgataagggagggataagagtctaagaaagaaaggagaaaccgcgacagagaattgaagagagca |
51706468 |
T |
|
| Q |
213 |
aaatgtcgtcggtgtcaagcatattcggatgcggggtttcgattgcgccaaattcattgagaaagaaagcaattggaattgaaaggagaaatgtttgtgg |
312 |
Q |
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| T |
51706469 |
aaatgtcgtcggtgtcaagcatattcggatgcggggtttcgattgcgccaaattcattgagaaagaaagcaattggaattgaaaggagaaatgtttgtgg |
51706568 |
T |
|
| Q |
313 |
aggattgttgatagagtgttcatcgaggccacagaagaaatcaactgcacatcacatgaagacgaggcccagaaaatcatcactgtcagataggaatcgg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
51706569 |
aggattgttgatagagtgttcatcgaggccacagaagaaatcaactgcacatcacatgaagacgagacccagaaaatcatcactgtcggataggaatcgg |
51706668 |
T |
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| Q |
413 |
aaaccaacagagtatgctccgttgccaccactgcctcctgattttacaattgtcatttctgctgatgcatcttcaacggctactgttgttcctccacccc |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || | |
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| T |
51706669 |
aaaccaacagagtatgctccgttgccaccactgcctcctgattttacaattgtcattcctgctgatgcatcttcaacggctactgttgttcctccgcctc |
51706768 |
T |
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| Q |
513 |
ctactccttctacttgattcggtac |
537 |
Q |
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| T |
51706769 |
ctactccttctacttgattcggtac |
51706793 |
T |
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