View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14507_high_10 (Length: 324)
Name: NF14507_high_10
Description: NF14507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14507_high_10 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 43619033 - 43619356
Alignment:
| Q |
1 |
tatgtgtaaggctcttgacattccctcagcagcaaatgcacttcgttactatgcaggtgcagctgataaaattcatggagaggtattaaaagttgcaaga |
100 |
Q |
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| T |
43619033 |
tatgtgtaaggctcttgacattccctcagcagcaaatacacttcgttactatgcaggtgcagctgataaaattcatggagaggtattaaaagttgcaaga |
43619132 |
T |
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| Q |
101 |
gagttccatgcttatacattgatggaaccaattggtgttgttggacacattattccttggaactttcccacttccctgttcttcgtcaaggttagccctt |
200 |
Q |
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| T |
43619133 |
gagttccatgcttatacattgatggaaccaattggtgttgttggacacattattccttggaactttcccacttccctgttctttgtcaaggttagccctt |
43619232 |
T |
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| Q |
201 |
gcttagctgctgggtgcaccatggtcgtcaaacctgctgagcaaacacctctatctgctttgttttatgctcatctagctaaattggtatgattcggtaa |
300 |
Q |
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| T |
43619233 |
gcttagctgctgggtgcaccatggtcgtcaaacctgctgagcaaacacctctatctgctttgttttatgctcatctagctaaattggtatgattcggtaa |
43619332 |
T |
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| Q |
301 |
atcattaatttctacttagcatct |
324 |
Q |
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| T |
43619333 |
atcattaatttctacttagcatct |
43619356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 8 - 282
Target Start/End: Original strand, 43626418 - 43626692
Alignment:
| Q |
8 |
aaggctcttgacattccctcagcagcaaatgcacttcgttactatgcaggtgcagctgataaaattcatggagaggtattaaaagttgcaagagagttcc |
107 |
Q |
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| T |
43626418 |
aaggcttttgaaattccttcagcagcaaatacactacgttactatgcaggtgctgctgataaaattcatggtgaggtattaaaatcttctggccaattcc |
43626517 |
T |
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| Q |
108 |
atgcttatacattgatggaaccaattggtgttgttggacacattattccttggaactttcccacttccctgttcttcgtcaaggttagcccttgcttagc |
207 |
Q |
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| T |
43626518 |
atgcatacacactgatggaaccaattggtgttgtgggacacatcattccatggaatgctcccactatggttttcttcaccaaagttagcccttccttagc |
43626617 |
T |
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| Q |
208 |
tgctgggtgcaccatggtcgtcaaacctgctgagcaaacacctctatctgctttgttttatgctcatctagctaa |
282 |
Q |
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| T |
43626618 |
tgctgggtgcaccatggttctcaaacctgctgaacaaacacctctttctgctttgttttatgcccatctagctaa |
43626692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 282
Target Start/End: Complemental strand, 32408610 - 32408372
Alignment:
| Q |
44 |
cgttactatgcaggtgcagctgataaaattcatggagaggtattaaaagttgcaagagagttccatgcttatacattgatggaaccaattggtgttgttg |
143 |
Q |
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| T |
32408610 |
cgttactatgccggtgctgcggataaaattcacggcaaggttttaaaacctgctcgggagttgcacgcatatactttgatggagccaatcggtgtcgttg |
32408511 |
T |
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| Q |
144 |
gacacattattccttggaactttcccacttccctgttcttcgtcaaggttagcccttgc-ttagctgctgggtgcaccatggtcgtcaaacctgctgagc |
242 |
Q |
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| T |
32408510 |
gacacattattccttggaattttcctagtactatgtttgctgctaaggtt-gctcctgctttggctgctggttgtactatggttcttaagcctgctgaac |
32408412 |
T |
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| Q |
243 |
aaacacctctatctgctttgttttatgctcatctagctaa |
282 |
Q |
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| T |
32408411 |
aaacacctctctctgctttgttttatgctcatcttgctaa |
32408372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 32433282 - 32433331
Alignment:
| Q |
113 |
tatacattgatggaaccaattggtgttgttggacacattattccttggaa |
162 |
Q |
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| T |
32433282 |
tatactttgatggaacctattggtgttgttggacacattataccttggaa |
32433331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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