View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14507_high_3 (Length: 517)
Name: NF14507_high_3
Description: NF14507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14507_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 17 - 508
Target Start/End: Complemental strand, 8184018 - 8183527
Alignment:
| Q |
17 |
agctagtattgttctcattgatatcaaaccatgcgacttcgttggtaagaatagctgcatgccaaattaaatataatgatttagtgatgcgaaaataaat |
116 |
Q |
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| T |
8184018 |
agctagtattgttctcattgatatcaaaccatgcgacttcgttggtaagaatagctgcatgccaaattaaatataatgatttagtgatgcaaaaataaat |
8183919 |
T |
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| Q |
117 |
caagaacatgccaaaggatgtagacaggaagcgcaagtggttggtgcagaatgtgtgtgagtattgtaaactcttaagtaccgagttcaatttctacaaa |
216 |
Q |
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| T |
8183918 |
caagaacatgccaaaggatgtagataggaagcgcaagtggttggtgcggaatgtgtgtgagtattgtaaactcttaagtaccgagttcaatttctacaaa |
8183819 |
T |
|
| Q |
217 |
taagaaaataaggttggtttgggttcctcagggaaaattgaagtttatttttctgcaaaccaacattagcttaagataatttaatgcatagtgtgattct |
316 |
Q |
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| T |
8183818 |
taagaaaataaggttggtttgggttcctcagggaaaattgaagtttacttttctgcaaaccaacattagcttaagataatttaatgcatagtgtgattct |
8183719 |
T |
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| Q |
317 |
aaaagaatgcttttgctgctttggaatacctgagaacattaataaacggacacgggcggtgaggcggtctcccattaatgaatagaagtagtgtttcaat |
416 |
Q |
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| T |
8183718 |
aaaagaatgcttttgctgctttggaatacctgagaacattaataaacggacacgggcggtgaggcggtctcccattaatgaatagaagtagtgtttcaat |
8183619 |
T |
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| Q |
417 |
agataaataggtatggtaacaacagccaggacgacaaatataacagctacatgatcaacttcatgcttgatcttgggactttgagcagagta |
508 |
Q |
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| T |
8183618 |
agataaataggtatggtaacaacagccaggacgacaaatataacagctacatgatcaacttcatgcttgatcttgggactttgagcagagta |
8183527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 6833200 - 6833156
Alignment:
| Q |
146 |
agcgcaagtggttggtgcagaatgtgtgtgagtattgtaaactct |
190 |
Q |
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| T |
6833200 |
agcgcaagtagttggtgtagagtgtgtgtgagtattgtaaactct |
6833156 |
T |
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