View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14507_high_4 (Length: 432)
Name: NF14507_high_4
Description: NF14507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14507_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 14 - 396
Target Start/End: Complemental strand, 35213566 - 35213188
Alignment:
| Q |
14 |
cttgtctggagtgattttaactgatatgtgaataactcgctcatannnnnnnaaaggaagtctaaaatttagccatgtgttacaactagctttggttctc |
113 |
Q |
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| T |
35213566 |
cttgtctggagtgattttaactgatatgtgaataactcgctcatatttttttaaaggaagtctaaaatttagccatgtgttacaactagctttggttctc |
35213467 |
T |
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| Q |
114 |
tacttctatagctttggtgaattgctaaaattgcaacgtgtggagacataaaattaaaggaggatgacacgaagaaaccaaactatgacttttgttgttt |
213 |
Q |
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| T |
35213466 |
tacttctatagctttggtgaattgctaaaattgcaacgtgtggagacataaaattaaaggaggatgacacgaagaaaccaaactatgacttttgttgttt |
35213367 |
T |
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| Q |
214 |
tgtttataggaaacatgcatgattcagcattcttttgaaataaaataaaaatattgtactaatacttaattatttatactaagtagaacaaaacaatgcc |
313 |
Q |
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| T |
35213366 |
tgtttatgggaaacatgcatgattcagcattcttttgaaataaaataaaaatattgtactaatac----ttatttatactaagtagaacaaaacaatgcc |
35213271 |
T |
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| Q |
314 |
actgagcctaagttggtaacaatctttttctatcatggcagcacgcagatttttctccttggtttctcgttctcaatctttcc |
396 |
Q |
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| T |
35213270 |
actgagcctaagttggtaacaatctttttctatcatggcagcacgcagatttttctccttggtttctcgttctcaatctttcc |
35213188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 432
Target Start/End: Complemental strand, 35213155 - 35213119
Alignment:
| Q |
396 |
catacattaggtgacagaaaattatcactaatcacct |
432 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
35213155 |
catacattaggtgacagaaaattatcactaatcacct |
35213119 |
T |
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