View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14507_low_1 (Length: 658)

Name: NF14507_low_1
Description: NF14507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14507_low_1
NF14507_low_1
[»] chr4 (1 HSPs)
chr4 (10-641)||(43615423-43616064)


Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 10 - 641
Target Start/End: Original strand, 43615423 - 43616064
Alignment:
Q  10 acatcatcatcaattcaatgggatgacctataccatgctatgctatagggttgagacaaatacgttagacatggacttcaatttgtaaaggccccaccaa 109  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43615423 acatcatcattaattcaatgggatgacctataccatgctatgctatagggttgagacaaatacgttagacatggacttcaatttgtaaaggccccaccaa 43615522  T
Q  110 gtatatactccaacagatatttttcactacagaagnnnnnnnnnn--atttaacagaaaaaacacatgttacaagtatatgaaaaagtattcggagaatg 207  Q
    |||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  43615523 gtatatactccaacagatatttttcactacagaagttttttttttttatttaacagaaaaaacacatgttacaagtacatgaaaaggtattcggagaatg 43615622  T
Q  208 ctaacgagtatcattaagatattgattaaagtgttaaaataagtaaatttgctaacataaaagtgaaaaattatatttataaaacaaagtttttagtatt 307  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || |    
T  43615623 ctaacgagtatcattaagatattaattaaagtgttaaaataagtaaatttactaacataaaagtgaaaaattatatttataaaacaaaatttttactaat 43615722  T
Q  308 gaattttttaagggcattgattaacgaaacccaaaatataaa-tattcggctacatttgagactcatt-ggggcggccaaatattgtaaagaatactatc 405  Q
    |||||| |||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43615723 gaatttcttaaaggcattgattaacgaaacccaaaatataaaccattcggctacatttgagactcattgggggcggccaaatattgtaaagaatactatc 43615822  T
Q  406 tctcaaaacccaaggagcactttcagtcataatagtcttttggtcatggcaaggctaagcctttgattctgtatgt------gtcacatggctctcactg 499  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||      ||||||||||||||||||    
T  43615823 tctcaaaacccaaggagcactttcactcataatagtcttttggtcatggcaaggctaagcttttgattctgtatgtgcatcagtcacatggctctcactg 43615922  T
Q  500 cattaggtattcttccaagaatgctactagtactattgtttctttatactatgcattgtgctcctaaaacacattgaattttgaataatgatgtttatct 599  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43615923 tattaggtattcttccaagaatgctactagtactattgtttctttatactatgcattgtgctcctaaaacacattgatttttgaataatgatgtttatct 43616022  T
Q  600 ttagtttttcaacatctcgttctctcttatctctttcattta 641  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  43616023 ttagtttttcaacatctcgttctctcttatctctttcattta 43616064  T

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