View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14507_low_10 (Length: 414)
Name: NF14507_low_10
Description: NF14507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14507_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 400
Target Start/End: Original strand, 34084630 - 34085027
Alignment:
| Q |
19 |
acaattgcctaattcaataaaaggatggggacattgaacatgatagtatannnnnnnnnnn-----------catatcgtgattgctcaaa-tgtgaatg |
106 |
Q |
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| T |
34084630 |
acaattgcctaattcaataaaaggatggggacattgaacatgatagtatatatatatatattttttttttttcatatcgtgattgctcaaaatgtgaatg |
34084729 |
T |
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| Q |
107 |
aatgtgattagatttgtatatagtaatcgtaatgaatacatataatccaaataagtatcaaaccattatagatttaaatagatcagaaactatgactaaa |
206 |
Q |
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| T |
34084730 |
aatgtgattagatttgtatatagtaatcgtaatgaatacatataatccaaataagtatcaaaccattatagatttaaatagatcagaaactatgactaaa |
34084829 |
T |
|
| Q |
207 |
taatatctcaatttttccccnnnnnnnnnnt----gaattagatcaatttcaaacctcaaatttctcatgcagcattaatttccatgtgtgacttcaata |
302 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34084830 |
taatatctcaatttttccccaaaaaaaaaaaaaaagaattagatcaatttcaaacctcaaatttctcatgcagcattaatttccatgtgtgacttcaatg |
34084929 |
T |
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| Q |
303 |
ccttcacatgtccttcacacacgtctaccatcaccacaaagcttcttaggaaatatttcttcacatgtctccatgaacgcttcaacaatgacatgatg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34084930 |
ccttcacatgtccttcacacacgtctaccatcaccacaaagcttcttaggaaatatttcttcacatgtctccatgaacgcttcaacaatgacatgatg |
34085027 |
T |
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