View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14507_low_14 (Length: 331)
Name: NF14507_low_14
Description: NF14507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14507_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 253
Target Start/End: Complemental strand, 5529349 - 5529101
Alignment:
| Q |
5 |
aagtttttaaaaacaaacaaggtacaaagaaattgtcaactccagtcccaattttttgtaaggacaaacccatattttttaacaaatgtaacacaaacat |
104 |
Q |
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| T |
5529349 |
aagtttttaaaaacaaacaaggtacaaagaaattgtcaactccagtcccaattttttttaaggacagacccatgttttttaacaaatgaaacacaaacat |
5529250 |
T |
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| Q |
105 |
aaaatcataagatattattatttccattcaccttaaactttttgtttctatgaactattgatttatttcctgatattgattattgtttatactccattat |
204 |
Q |
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| T |
5529249 |
aaaatcataagatattattatttccattcaccttaaactttttgtttctatgaactattgatttatttcatgatattgattatagtttatactccatcat |
5529150 |
T |
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| Q |
205 |
tttaaatggaacttttatccctcctcacttatttgatagctaaaattaa |
253 |
Q |
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| T |
5529149 |
tttaaatggaacttttatcccacctcacttatttgatagctaaaattaa |
5529101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 244 - 318
Target Start/End: Complemental strand, 5528700 - 5528626
Alignment:
| Q |
244 |
ctaaaattaatgtgtaaaccacattgaggtggataatttataatcaagccaataatacaatgtcgtggtataaag |
318 |
Q |
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| T |
5528700 |
ctaaaagtaatgtgtaaaccacattgagatggataatttataatcaagccaataatacaatgccgtggtataaag |
5528626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 6143658 - 6143605
Alignment:
| Q |
190 |
tttatactccattattttaaatggaa-cttttatccctcctcacttatttgata |
242 |
Q |
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| T |
6143658 |
tttatactccattattttaaatgaaatattttatcccgcctcactcatttgata |
6143605 |
T |
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