View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14507_low_16 (Length: 315)
Name: NF14507_low_16
Description: NF14507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14507_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 39516516 - 39516205
Alignment:
| Q |
1 |
tgcttctgtatcaattcaattgcctaatgttcgccgtttgccttctctgtctacactgagtgaaggggatgacacgtctatgtctattggtagagttatt |
100 |
Q |
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| T |
39516516 |
tgcttctgtatcaattcaattgcctaatgttcgccgtttgccttctctgtctacactgagtgaaggggatgacacgtctatgtctattggtagagttatt |
39516417 |
T |
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| Q |
101 |
gatgaatctgatagtgcagcggattctgttttctctcagttgaaaatagatgatgctagatagattttcatgttttctcacaagtgtctcaagtaagtgg |
200 |
Q |
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| T |
39516416 |
gatgaatctgatagtgcagcagattctgttttctctcagttgaaaatagatgatgctagatagatattcatgttttctcacaagtgtctcaagtaagtgg |
39516317 |
T |
|
| Q |
201 |
aggagctgtttttattagatggctcacttccctcttttgtccttgtttccttgtatttttcatacttagttatggttgttggtctattcttaatcgtaag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
39516316 |
aggagctgtttttattagatggctcacttccctcttttgtccttgtttccttgtatttttcatacttggttatggttgttggtctattcttaattgtaag |
39516217 |
T |
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| Q |
301 |
actaatgatgat |
312 |
Q |
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|||||||||||| |
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| T |
39516216 |
actaatgatgat |
39516205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 39509448 - 39509276
Alignment:
| Q |
1 |
tgcttctgtatcaattcaattgcctaatgttcgccgtttgccttctctgtctacactgagtgaaggggatgacacgtctatgtctattggtagagttatt |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| |||||| | ||||||||||||| || |||||| |
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| T |
39509448 |
tgcttctgtatcaattcaattgcccaatgttcgccgtttaccttctctgaatacactgagtgaagtggatgatatgtctatgtctattttgagggttatt |
39509349 |
T |
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| Q |
101 |
gatgaatctgatagtgcagcggattctgttttctctcagttgaaaatagatgatgctagatagattttcatgt |
173 |
Q |
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| T |
39509348 |
gatgaatctgatagtgctgggcattctgttttctctgagttgaaccttgatgatgccagatagattttcatgt |
39509276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 39509245 - 39509197
Alignment:
| Q |
181 |
caagtgtctcaagtaagtggaggagctgtttttattagatggctcactt |
229 |
Q |
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| T |
39509245 |
caagtgtctcaagtaagtggaggagctgtttttattagatggctgactt |
39509197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 39542514 - 39542449
Alignment:
| Q |
15 |
ttcaattgcctaatgttcgccgtttgccttctctgtctacactgagtgaaggggatgacacgtcta |
80 |
Q |
| |
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| T |
39542514 |
ttcaattgcctaatgttcagcgtttaccttctctgtctgcactgactgaagtggatggcacgtcta |
39542449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 39574363 - 39574284
Alignment:
| Q |
1 |
tgcttctgtatcaattcaattgcctaatgttcgccgtttgccttctctgtctacactgagtgaaggggatgacacgtcta |
80 |
Q |
| |
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||||| || |||| |||||||||||||||||| | ||| |||||||||||||||| || ||||| ||||| |||||||| |
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| T |
39574363 |
tgcttttgcatcacttcaattgcctaatgttcagcatttaccttctctgtctacaccgactgaagtggatggcacgtcta |
39574284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 39578896 - 39578817
Alignment:
| Q |
1 |
tgcttctgtatcaattcaattgcctaatgttcgccgtttgccttctctgtctacactgagtgaaggggatgacacgtcta |
80 |
Q |
| |
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||||| || |||| |||||||||||||||||| ||||| |||||||||||||| |||| | ||| ||||| |||||||| |
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| T |
39578896 |
tgcttttgcatcacttcaattgcctaatgttcagcgtttaccttctctgtctaccctgactaaagtggatggcacgtcta |
39578817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 39509070 - 39509016
Alignment:
| Q |
220 |
tggctcacttccctcttttgtccttgtttccttgtattttt-catacttagttat |
273 |
Q |
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|||||||||| || |||||||||||||||||||||||||| ||| ||||||||| |
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| T |
39509070 |
tggctcacttatctgttttgtccttgtttccttgtatttttacatccttagttat |
39509016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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