View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14507_low_20 (Length: 291)
Name: NF14507_low_20
Description: NF14507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14507_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 269
Target Start/End: Complemental strand, 39516330 - 39516082
Alignment:
| Q |
19 |
tctcaagtaagtggaggagctgtttttattagatggctcacttccctcttttgtccttgtttccttgtatttttcatacttagttatggttgttggtcta |
118 |
Q |
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| T |
39516330 |
tctcaagtaagtggaggagctgtttttattagatggctcacttccctcttttgtccttgtttccttgtatttttcatacttggttatggttgttggtcta |
39516231 |
T |
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| Q |
119 |
ttcttaatcgtaagactaatgatgatgtctatttctgatgattgcaataaactattggtaattaggtgcattatatacatcacttatttcaatgcttgaa |
218 |
Q |
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| T |
39516230 |
ttcttaattgtaagactaatgatgatttctatttttgatgattgcaataaaccattggtaattagctgcattatatacatcacttatttgaatgcttgaa |
39516131 |
T |
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| Q |
219 |
ccaatatactctacactggccagcaatgccatatactagtatatgattctg |
269 |
Q |
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| T |
39516130 |
ccaatat--tctacactggccagcaaggccatatactagtatatgattctg |
39516082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 39509239 - 39509197
Alignment:
| Q |
19 |
tctcaagtaagtggaggagctgtttttattagatggctcactt |
61 |
Q |
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| T |
39509239 |
tctcaagtaagtggaggagctgtttttattagatggctgactt |
39509197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 223
Target Start/End: Complemental strand, 39509070 - 39508886
Alignment:
| Q |
52 |
tggctcacttccctcttttgtccttgtttccttgtattttt-catacttagttatg---gttgttggtctattcttaatcgtaagacta---------at |
138 |
Q |
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| T |
39509070 |
tggctcacttatctgttttgtccttgtttccttgtatttttacatccttagttattatcgttgctggtctattctaaattgtaaaattattattgatgat |
39508971 |
T |
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| Q |
139 |
gatgatgtctatttctgatgattgcaataaactattggtaattaggtgcattatatacatcacttatttcaatgcttgaaccaat |
223 |
Q |
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| T |
39508970 |
gatgctgtatatttttgatgcttgaaataaattgttggtaattatgtgcattatatacagcagttgtttgagtgcttgcaccaat |
39508886 |
T |
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