View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14507_low_22 (Length: 273)
Name: NF14507_low_22
Description: NF14507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14507_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 39511510 - 39511583
Alignment:
| Q |
21 |
tgtacaatgaatacattgtttataatgtggaccagattaagatgcgttatgttgttaacgttaaattcaatttt |
94 |
Q |
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| T |
39511510 |
tgtacaatgaatacattgtttataatgtggagcagattaggatgcgttatgttgttaacgttaaattcaatttt |
39511583 |
T |
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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 39518295 - 39518363
Alignment:
| Q |
24 |
acaatgaatacattgtttataatgtggaccagattaagatgcgttatgttgttaacgttaaattcaatt |
92 |
Q |
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||||||| |||||||||||||||||||| ||||||| ||||||||||||||| || ||||||||||||| |
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| T |
39518295 |
acaatgagtacattgtttataatgtggagcagattaggatgcgttatgttgtgaatgttaaattcaatt |
39518363 |
T |
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