View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14507_low_3 (Length: 543)
Name: NF14507_low_3
Description: NF14507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14507_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Complemental strand, 47383033 - 47382510
Alignment:
| Q |
1 |
aaacctttgaaataaaagagtaagtgcttgatgaattatatgtttatatacaaatggtgaagaaaatgttatggggggaaaatcaatgttttacaagaat |
100 |
Q |
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| T |
47383033 |
aaacctttgaaataaaagagtaagtgcttgatgaattatatgtttatatacaaatggtgaagaaaatgttatgggggaaaaatcaatgttttacaagaat |
47382934 |
T |
|
| Q |
101 |
tatgattcgctaaaatagtggtttaggtacgtgtttggggctgtctgatccatgcatcatgattgtgttttgggaaaatctagatccaacaaaacaagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47382933 |
tatgattcgctaaaatagtggtttaggtacgtgtttggggctgtctgatccatgcatcatgattgtgttttgggaaaatctagatccaacaaaacaagat |
47382834 |
T |
|
| Q |
201 |
ccaatgccttttatttttctgcgtagggtttgaaatttcaaggatatatacacaatagtgagtcctactaggcatgatatgttctgtctgcattgatgaa |
300 |
Q |
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| T |
47382833 |
ccaatgccttttatttttctgcgtagggtttgaaatttcaaggatatatacacaatagtgagtcctactaggcatgatatgttctgtctgcattgatgaa |
47382734 |
T |
|
| Q |
301 |
gcaaattcaaatatcctcatgataacttgccttaatgtgtccatggatataagttctttggtggcattcacatcacatcattgtttcannnnnnnnngct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47382733 |
gcaaattcaaatatcctcatgataacttgccttaatgtgtccatggatataagttctttggtggcattcacatcacatcattgtttca-ttttttttgct |
47382635 |
T |
|
| Q |
401 |
tatgaccaatagtattaataagattttaattcacatatattcccgtataaattaatgttgatttagtttgcgtatagaacttaacttcgaagagtaattt |
500 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47382634 |
tatgaccaatagtattaataagattttaattcacatacattcccgtataaattaatgttgatttagtttgcgtatagaacttaacttcgaagagtaattt |
47382535 |
T |
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| Q |
501 |
ggttagggattttaagtacccctat |
525 |
Q |
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| T |
47382534 |
ggttagggattttaagtacccctat |
47382510 |
T |
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