View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14507_low_5 (Length: 473)
Name: NF14507_low_5
Description: NF14507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14507_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 318 - 456
Target Start/End: Complemental strand, 533309 - 533171
Alignment:
| Q |
318 |
gcatatagattctttttcctttttctaggaaactttggaatataaatatctatgctgacagcaacaatcaaaatatgaaaagactgaaaaggaactctct |
417 |
Q |
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| T |
533309 |
gcatatagattctttttcctttttctaggaaactttggaatataaatatctatgctgacagcaacaatcaaaatatgaaaagactgaaaaggaactctct |
533210 |
T |
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| Q |
418 |
caaatcttcggaacaaggattgctttcttccacaaaatc |
456 |
Q |
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| T |
533209 |
caaatcttcggaacaaggattgctttcttccacaaaatc |
533171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 86 - 276
Target Start/End: Complemental strand, 533533 - 533351
Alignment:
| Q |
86 |
tactataagtaaaaccataatttttatttattggagagagcaacagtatatataggttattaagttgtttgtcatgcgannnnnnnnnnnnnnaaaagat |
185 |
Q |
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| T |
533533 |
tactataagtaa--ccataatttttgtttattggagagagcaacagtatatataggttattaagttgtttgttatgcgagtgtgtgt------aaaagat |
533442 |
T |
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| Q |
186 |
aaaaaggaatctatttggtaaattcaaacgaggataaaattnnnnnnnctaactacaaaaatttacttaatttgtttctgacgtctgtttt |
276 |
Q |
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| T |
533441 |
aaaaaggaatctatttggtaaattcaaacgaggataaaattaaaaaaactaactacaaaaatttacttaatttgtttctgacgtctgtttt |
533351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 533568 - 533532
Alignment:
| Q |
10 |
acattactcagtcaaaacatcggctaaaaagagggta |
46 |
Q |
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| T |
533568 |
acattactcagtcaaaacatcagctaaaaagagggta |
533532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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