View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14507_low_6 (Length: 447)
Name: NF14507_low_6
Description: NF14507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14507_low_6 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 13 - 447
Target Start/End: Original strand, 40535838 - 40536265
Alignment:
| Q |
13 |
ataaaaattgatttcttatgctaacaataatgaattttgctttatggatagttacacaaaatgcactcttttttatctcatgtcaccttatcatacaaaa |
112 |
Q |
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| T |
40535838 |
ataaaaattgatttcttatgctaacaataatgaattttgctttatggatagttacacaaaatgcactcttttttatcttgtgtcaacttatcatacaaaa |
40535937 |
T |
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| Q |
113 |
tttcttatttcttattcatatgttagagcgagggatcgaactcatgatcacttaaaagctcaaatttcttacaattgatttaaaattatatcgaactcga |
212 |
Q |
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| T |
40535938 |
ttt-------cttattcatatgttagagccagggatcgaactcatgatcgcttaaaagttcaaatttcttacaattgatctaaagttatgtcgaactcga |
40536030 |
T |
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| Q |
213 |
atgacaaactttcgcaagcaaaaattgaagcatttggaaaagggtcataatcatctaactttcacaacctagttgatggctagcttgatgtggttgatta |
312 |
Q |
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| T |
40536031 |
atgacaaactttcgcaagcaaaaattgaagcatttggaaaaggatcataatcatctgactttcacaacctagttgatggtaagcttgatgtggttgattc |
40536130 |
T |
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| Q |
313 |
gagctatgcatgatttgaactgtagaacaatcaagctaatgcttaggtaagatatgtctatgtgaggtgagttgacatgacttggacaataatactagtg |
412 |
Q |
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| T |
40536131 |
gagctatgcatgatttgaactgtagaacaatcaagctaatgcttaggtaagatatgcctatgtgaggtgagttgacatgacttggacaatcatactagtg |
40536230 |
T |
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| Q |
413 |
atgtggtagcgcgtggttggacgaggtgagctagt |
447 |
Q |
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| T |
40536231 |
atgtggtagctcttgggtggacgaggtgagctagt |
40536265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 263
Target Start/End: Complemental strand, 22127083 - 22126840
Alignment:
| Q |
13 |
ataaaaattgatttcttatgctaacaataatgaattttgctttatggatagttacacaaaatgcactcttttttatctcatgtcaccttatcatacaaaa |
112 |
Q |
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| T |
22127083 |
ataaaaattgatttcttatgctaacaataatgaattttgctttatggatagttacacaaaatgcactcttttttatcttgtgtcaacttatcatacaaaa |
22126984 |
T |
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| Q |
113 |
tttcttatttcttattcatatgttagagcgagggatcgaactcatgatcacttaaaagctcaaatttcttacaattgatttaaaattatatcgaactcga |
212 |
Q |
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| T |
22126983 |
tttcttatt-------catatgttagagccagggatcgaactcatgatcgcttaaaagttcaaatttcttacaattgatctaaagttatgtcgaactcga |
22126891 |
T |
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| Q |
213 |
atgacaaactttcgcaagcaaaaattgaagcatttggaaaagggtcataat |
263 |
Q |
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| T |
22126890 |
atgacaaactttcgcaagcaaaaattgaagcatttggaaaaggatcataat |
22126840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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