View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14507_low_9 (Length: 419)

Name: NF14507_low_9
Description: NF14507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14507_low_9
NF14507_low_9
[»] chr5 (1 HSPs)
chr5 (22-409)||(39307624-39308011)
[»] chr7 (3 HSPs)
chr7 (205-245)||(42602533-42602573)
chr7 (206-264)||(31893901-31893959)
chr7 (203-240)||(16885556-16885593)
[»] chr1 (3 HSPs)
chr1 (67-201)||(33355834-33355961)
chr1 (203-261)||(49001975-49002033)
chr1 (204-245)||(6250107-6250148)
[»] chr2 (1 HSPs)
chr2 (203-262)||(36577094-36577153)
[»] chr4 (1 HSPs)
chr4 (202-240)||(16025019-16025057)
[»] chr6 (1 HSPs)
chr6 (202-243)||(30628900-30628941)
[»] chr3 (1 HSPs)
chr3 (341-377)||(28795301-28795337)


Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 22 - 409
Target Start/End: Original strand, 39307624 - 39308011
Alignment:
Q  22 gaaaagataagaattcgattgaacttgaagcatattatattacgagaacaaaagtaaacaagttgaaaacaaatattttgcatgactgttcaaaggaatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39307624 gaaaagataagaattcgattgaacttgaagcatattatattacgagaacataagtaaacaagttgaaaacaaatattttgcatgactgttcaaaggaatt 39307723  T
Q  122 atgttattatcattatctacacggaatttggttttgatgttcaaagcgttgagagttgagacacaaatgacatatacaaattagaaaattgctcttctcc 221  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  39307724 atgttattatcattatctacacggaacttggttttgatgttcaaagcgttgagagttgagacacaaatgacatatacaaactagaaaattgctcttctct 39307823  T
Q  222 tatcaaaaattgttcactctcatatcaattgacgaaaatactccacatagacgttataccagcgtgattaagtcacgttctcaattcaatatgagttaac 321  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||    
T  39307824 tatccaaaattgttcactctcataccaattgacgaaaatactccacatagacgttatacgagcgtgattaagtcacgttctcaatttaatgtgagttaac 39307923  T
Q  322 tcatataagttgcagtagtggtgaaggattcagtatgagaattttaagaatcggatattacatgtttcaatttggaacttgatgatgt 409  Q
    |||||||||||| ||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39307924 tcatataagttgtagtagcggtgaaggatttagtatgagaattttaagaatcgaatattacatgtttcaatttggaacttgatgatgt 39308011  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 42602533 - 42602573
Alignment:
Q  205 gaaaattgctcttctcctatcaaaaattgttcactctcata 245  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  42602533 gaaaattgctcttctcctaacaaaaattgttcactctcata 42602573  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 264
Target Start/End: Complemental strand, 31893959 - 31893901
Alignment:
Q  206 aaaattgctcttctcctatcaaaaattgttcactctcatatcaattgacgaaaatactc 264  Q
    |||||||||||||||| ||| ||||||| |||||||||||  || |||| |||||||||    
T  31893959 aaaattgctcttctcccatccaaaattgctcactctcatacaaactgacaaaaatactc 31893901  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 16885556 - 16885593
Alignment:
Q  203 tagaaaattgctcttctcctatcaaaaattgttcactc 240  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  16885556 tagaaaattgctcttctcctatcaaattttgttcactc 16885593  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 201
Target Start/End: Complemental strand, 33355961 - 33355834
Alignment:
Q  67 gaacaaaagtaaacaagttgaaaacaa--atattttgcatgactgttcaaaggaattatgttattatcattatctacacggaatttggttttgatgttca 164  Q
    ||||||||||||||| || ||||| ||  ||||||||||||||||||||||| || | |||||||||       |||||| || |||||||  || ||||    
T  33355961 gaacaaaagtaaacatgtagaaaaaaacaatattttgcatgactgttcaaag-aactctgttattatg------tacacgtaacttggtttccattttca 33355869  T
Q  165 aagcgttgagagttgagacacaaatgacatatacaaa 201  Q
    ||||| |||||||||||||||  ||||||||||||||    
T  33355868 aagcggtgagagttgagacac--atgacatatacaaa 33355834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 261
Target Start/End: Complemental strand, 49002033 - 49001975
Alignment:
Q  203 tagaaaattgctcttctcctatcaaaaattgttcactctcatatcaattgacgaaaata 261  Q
    ||||||||||||||||||||||  |||||||||||||||||  | ||||||| ||||||    
T  49002033 tagaaaattgctcttctcctatacaaaattgttcactctcacgtgaattgaccaaaata 49001975  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 6250148 - 6250107
Alignment:
Q  204 agaaaattgctcttctcctatcaaaaattgttcactctcata 245  Q
    |||||||||||||||||||||| |||||||||| ||| ||||    
T  6250148 agaaaattgctcttctcctatccaaaattgttccctcccata 6250107  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 36577094 - 36577153
Alignment:
Q  203 tagaaaattgctcttctcctatcaaaaattgttcactctcatatcaattgacgaaaatac 262  Q
    ||||||||||||||||||| ||| ||||||||| |||||||||  || | ||||||||||    
T  36577094 tagaaaattgctcttctcccatccaaaattgttgactctcatacaaagtaacgaaaatac 36577153  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 16025019 - 16025057
Alignment:
Q  202 ttagaaaattgctcttctcctatcaaaaattgttcactc 240  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  16025019 ttagaaaattgctcttctccaatcaaaaattgctcactc 16025057  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 30628941 - 30628900
Alignment:
Q  202 ttagaaaattgctcttctcctatcaaaaattgttcactctca 243  Q
    |||||||||||||||||||| |  ||||||||||||||||||    
T  30628941 ttagaaaattgctcttctcccaataaaaattgttcactctca 30628900  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 377
Target Start/End: Original strand, 28795301 - 28795337
Alignment:
Q  341 ggtgaaggattcagtatgagaattttaagaatcggat 377  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  28795301 ggtgaaagattcggtatgagaattttaagaatcggat 28795337  T

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