View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14508_high_1 (Length: 570)
Name: NF14508_high_1
Description: NF14508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14508_high_1 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 4e-67; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 178 - 402
Target Start/End: Original strand, 923592 - 923811
Alignment:
| Q |
178 |
tatgtttcaataactattaatttaaagtgtgtctctaatcatatgtttttcttcttttaagagttccgattgaaaaaatggtgnnnnnnnagatttcttt |
277 |
Q |
| |
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||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||| |||||||||| |
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| T |
923592 |
tatgtttcaatcactatt---ttaaagtgtgtctctaatcatatgtttttcttcttt-aagagtttggattgaaaaa-tggtgtctttttagatttcttt |
923686 |
T |
|
| Q |
278 |
aagagtttagatagaaaaatggtgtctttttagagtttagaaatgaatgcaactgaactaagtttcagacacatggacacgtgttctaataataaccttt |
377 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| | || |||||||||| ||||||||||| |||||||||||||||| ||| |
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| T |
923687 |
aagagtttagatagaaaaatagtgtctttttagagtttagaaatgaatgcagcagatctaagtttcaaacacatggacatgtgttctaataataactttt |
923786 |
T |
|
| Q |
378 |
ataattgatttttccgcgttgagat |
402 |
Q |
| |
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|||||||||||||| |||||||||| |
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| T |
923787 |
ataattgatttttctgcgttgagat |
923811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 14455607 - 14455449
Alignment:
| Q |
1 |
accaaagagctgctatagtattata--gtacacaaaaggaatactctaaaaatatataattctgcacatgtatgtcactttgtgtagctgaaaccatttt |
98 |
Q |
| |
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||||||| ||||||||||||||||| ||||| | ||||| ||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
14455607 |
accaaagtgctgctatagtattatatagtacaaagaagga-tactctaaaaatataaaattatgcacatgtatgtcactttgtgtagctaaaaccatttt |
14455509 |
T |
|
| Q |
99 |
cattatatatgaacatgctttgctgtcaaagtttataaatgaagcctatatgtggtcata |
158 |
Q |
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| T |
14455508 |
cattatatatgaccatgcttttctgtcaaagtttataaatgaaatctatatgtggtcata |
14455449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 493 - 555
Target Start/End: Original strand, 22996457 - 22996517
Alignment:
| Q |
493 |
aataagttatttggatttattcattattaataacttacacatcaacagttagctctatttcat |
555 |
Q |
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| T |
22996457 |
aataagttatttggatttattcattattaataactt--acatcaatagatagctctatttcat |
22996517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 275 - 392
Target Start/End: Complemental strand, 2191819 - 2191701
Alignment:
| Q |
275 |
tttaagagtttagatagaaaaatggtgtctttttagagtttagaaatgaatgcaactgaactaagtttcagacacatggacacgtgttctaataataacc |
374 |
Q |
| |
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|||||||| ||| ||||||||| |||||| || |||| |||||||||||||||||||| ||||||||| |||||| ||| || |||| ||| ||||| |
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| T |
2191819 |
tttaagagcttatatagaaaaaaggtgtcgttgaagagcttagaaatgaatgcaactgatataagtttcaaacacatatacatgtattctgatactaacc |
2191720 |
T |
|
| Q |
375 |
-tttataattgatttttcc |
392 |
Q |
| |
|
||| |||||||||||||| |
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| T |
2191719 |
ttttgtaattgatttttcc |
2191701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 121; Significance: 1e-61; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 34800 - 34641
Alignment:
| Q |
1 |
accaaagagctgctatagtattata--gtacacaaaaggaatactctaaaaatatataattctgcacatgtatgtcactttgtgtagctgaaaccatttt |
98 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
34800 |
accaaagtgctgctatagtattatatagtacacagaaggaatactctaaaaatatataattatgcacatgtatgtcactttgtgtagctaaaaccatttt |
34701 |
T |
|
| Q |
99 |
cattatatatgaacatgctttgctgtcaaagtttataaatgaagcctatatgtggtcata |
158 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
34700 |
cattatatatgaccatgctttgctgtcaaagtttataaatgaaatctatatgtggtcata |
34641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 41447 - 41308
Alignment:
| Q |
22 |
tatagtacacaaaaggaatactctaaaaatatataattctgcacatgtatgtcactttgtgtagctgaaaccattttcattatata---tgaacatgctt |
118 |
Q |
| |
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||||||||| | ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||| |
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| T |
41447 |
tatagtacaaagaaggaatactctaaaaaaatataattatgcacatgtatgtcactttgtgtagctaaaaccattttcattatatacgtcgaccatgctt |
41348 |
T |
|
| Q |
119 |
tgctgtcaaagtttataaatgaagcctatatgtggtcata |
158 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||| |
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| T |
41347 |
tgctgtcaaagtttataaatgaaatctatatgtggtcata |
41308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 112 - 409
Target Start/End: Complemental strand, 46833357 - 46833076
Alignment:
| Q |
112 |
catgctttgctgtcaaagtttataaatgaagcctatatgtggtcataaaactaatgtatcaattactatgtttcaataactattaatttaaagtgtgtct |
211 |
Q |
| |
|
|||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| |||||| |
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| T |
46833357 |
catgtttttctgtaaaagtttataaatgaagcctatatgtggtcataaaactaatgtatcaataactatgtttcaat---cattattttaaa--gtgtct |
46833263 |
T |
|
| Q |
212 |
ctaatcatatgtttttcttcttttaagagttccgattgaaaaaatggtgnnnnnnnagatttctttaagagtttagatagaaaaatggtgtctttttaga |
311 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| |||||| ||||||||| | ||| |||||||||||| |||||||||||||||||||| |
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| T |
46833262 |
ctaatcatgtgtttttcttc-tttaagagtttcgattg--aaaatggtg-----------tctttttagagtttagataaaaaaatggtgtctttttaga |
46833177 |
T |
|
| Q |
312 |
gtttagaaatgaatgcaactgaactaagtttcagacacatggacacgtgttctaata---ataacctttataattgatttttccgcgttgagattttatt |
408 |
Q |
| |
|
||||| ||||||||||| ||| |||||||||| | ||||||||| | |||||||| ||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
46833176 |
gtttaaaaatgaatgcagttgatctaagtttcaaatacatggacatattttctaataattataacctttataattgatttttccgtgttgagattttatt |
46833077 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 9e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 170 - 417
Target Start/End: Complemental strand, 27541035 - 27540794
Alignment:
| Q |
170 |
tcaattactatgtttcaataactattaatttaaagtgtgtctctaatcatatgtttttcttcttttaagagttccgattgaaaaaatggtgnnnnnnnag |
269 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||| ||||| ||||||| |||||||||||||| |||| || |||||||||| | ||| | |
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| T |
27541035 |
tcaattactatgtttcaatcacta---atttaaagtatgtctttaatcatgtgtttttcttcttt-aagaattttgattgaaaaa-tagtgtcgttttat |
27540941 |
T |
|
| Q |
270 |
atttctttaagagtttagatagaaaaatggtgtctttttagagtttagaaatgaatgcaactgaactaagtttcagacacatggacacgtgttctaataa |
369 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||| | || ||| ||||||||||| | | |||||||||| ||||||||||| |||||||||||| |
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| T |
27540940 |
agttctttaagagtttagatagaaaaatggtgtctttt-atagcttataaatgaatgcagataatctaagtttcaaacacatggacatgtgttctaataa |
27540842 |
T |
|
| Q |
370 |
taacctttataattgatttttccgcgttgagattttatttttcagtag |
417 |
Q |
| |
|
||||||| |||||||||||||| || |||||||||||||||||||||| |
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|
| T |
27540841 |
taaccttcataattgatttttctgcattgagattttatttttcagtag |
27540794 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 27445911 - 27446050
Alignment:
| Q |
22 |
tatagtacacaaaaggaatactctaaaaatatataattctgcacatgtatgtcactttgtgtagctgaaaccattttcattatata---tgaacatgctt |
118 |
Q |
| |
|
||||||||| | ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||| |
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|
| T |
27445911 |
tatagtacaaagaaggaatactctaaaaaaatataattatgcacatgtatgtcactttgtgtagctaaaaccattttcattatatacgtcgaccatgctt |
27446010 |
T |
|
| Q |
119 |
tgctgtcaaagtttataaatgaagcctatatgtggtcata |
158 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27446011 |
tgctgtcaaagtttataaatgaaatctatatgtggtcata |
27446050 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 272 - 385
Target Start/End: Original strand, 45032127 - 45032240
Alignment:
| Q |
272 |
ttctttaagagtttagatagaaaaatggtgtctttttagagtttagaaatgaatgcaactgaactaagtttcagacacatggacacgtgttctaataata |
371 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||||||| |||||||| ||||| |||||||| | |||||||||| ||||||||||| |||| |||||| || |
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|
| T |
45032127 |
ttctttaagagtgtagatagtaaaattgtgtcttttaagagtttataaatgtatgcaacttatctaagtttcaaacacatggacatgtgtgctaatacta |
45032226 |
T |
|
| Q |
372 |
acctttataattga |
385 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
45032227 |
acctttgtaattga |
45032240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 366
Target Start/End: Original strand, 4357204 - 4357297
Alignment:
| Q |
272 |
ttctttaagagtttagatagaaaaatggtgtctttttagagtttagaaatgaatgcaactgaactaagtttcagacacatggacacgtgttctaa |
366 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| ||||||| |||||||||||| |||| |||||||| | ||||||||||| ||||||||| |
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|
| T |
4357204 |
ttctttaagagtttagatataaaaaatgtgtcttta-agagtttggaaatgaatgcagctgatctaagtttaaaacacatggacatgtgttctaa |
4357297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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