View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14508_high_2 (Length: 458)
Name: NF14508_high_2
Description: NF14508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14508_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 10 - 438
Target Start/End: Complemental strand, 31605639 - 31605211
Alignment:
| Q |
10 |
gcacagagacaagcaaattcaaggaaagatagttcttctatagattcgatgacaatttgtttgctggctatgattgctttcacaatatgtgttttacgtc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31605639 |
gcacagagacaagcaaattcaaggaaagatagttcttctatagattcgatgacaatttgtttgctggctatgattgctttcacaatatgtgttttacgtc |
31605540 |
T |
|
| Q |
110 |
ccataatgttttggatgataagacaaacaccagaagggaaacaaattaaagaatcgtacatattttcggtatttttaatgttattaggctgctcgttatt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31605539 |
ccataatgttttggatgataagacaaacaccagaagggaaacaaattaaagaatcgtacatactttcggtatttttaatgttattaggctgctcgttatt |
31605440 |
T |
|
| Q |
210 |
tagtgaagttattggagaacattttatgcttggtcctgtaatttttggcatggctgtacctgatggaccgccattaggatcagcattgactgaaagattg |
309 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31605439 |
tagtgaggttattggagaacattttatgcttggtcctgtaatttttggcatggctgtacctgatggaccgccattaggatcagcattgactgaaagattg |
31605340 |
T |
|
| Q |
310 |
gaaacaatggtgtcaacaatatttttgccactgtactttctttatagtggtgctagtttcaaaattttcataattgatgctcgtacctttgcaattgtac |
409 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
31605339 |
gaaacaatggtgtcaacaatatttttgccattgtactttctttatagtggtgctagtttcaaatttttcgtaattgatgctcgtacctttgcaattgtac |
31605240 |
T |
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| Q |
410 |
aagttgttgctgtagttgcatatttgggg |
438 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
31605239 |
aagttgttgctgtagttgcatatttgggg |
31605211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 57 - 437
Target Start/End: Complemental strand, 31595828 - 31595448
Alignment:
| Q |
57 |
gatgacaatttgtttgctggctatgattgctttcacaatatgtgttttacgtcccataatgttttggatgataagacaaacaccagaagggaaacaaatt |
156 |
Q |
| |
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|||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||| |||||| ||||||||||||| |||||| ||| |||| |
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| T |
31595828 |
gatgacaatttgtttgctagctatgattgccttcacaatatgtgttctacgtcccataatgttgtggatggtaagacaaacacccgaagggcaaccaatt |
31595729 |
T |
|
| Q |
157 |
aaagaatcgtacatattttcggtatttttaatgttattaggctgctcgttatttagtgaagttattggagaacattttatgcttggtcctgtaatttttg |
256 |
Q |
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|||||||| ||| || |||||||| ||||||||||||| || ||||| ||||||| || ||||||||||||||||||| |||||| ||||||||| ||| |
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| T |
31595728 |
aaagaatcatacgtactttcggtaattttaatgttattggggtgctcattatttatggaggttattggagaacattttacgcttgggcctgtaattcttg |
31595629 |
T |
|
| Q |
257 |
gcatggctgtacctgatggaccgccattaggatcagcattgactgaaagattggaaacaatggtgtcaacaatatttttgccactgtactttctttatag |
356 |
Q |
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|| ||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| | | |
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| T |
31595628 |
gcttggctgtacctgacgggcctccattaggatcagcattgactgaaagattggaaacaatggtgtcaaaaatatttttgccattgtactttcttttttg |
31595529 |
T |
|
| Q |
357 |
tggtgctagtttcaaaattttcataattgatgctcgtacctttgcaattgtacaagttgttgctgtagttgcatatttggg |
437 |
Q |
| |
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|||||| ||||||||| | || |||||||| ||||| ||||| || ||| ||| || |||||||| |||||| |||||| |
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|
| T |
31595528 |
tggtgcaagtttcaaattgtttttaattgattctcgttgctttgtaactgtgcaaattattgctgtatttgcatttttggg |
31595448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 112 - 438
Target Start/End: Complemental strand, 31579911 - 31579585
Alignment:
| Q |
112 |
ataatgttttggatgataagacaaacaccagaagggaaacaaattaaagaatcgtacatattttcggtatttttaatgttattaggctgctcgttattta |
211 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||| |||| ||| |||||||| ||||||||||| || ||||||||| |||| |||||||| ||||||| |
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| T |
31579911 |
ataatgttttggatgataagaaaaacacctgaaggaaaaccaatcaaagaatcatacatattttcagtgtttttaatgatattgggctgctcattattta |
31579812 |
T |
|
| Q |
212 |
gtgaagttattggagaacattttatgcttggtcctgtaatttttggcatggctgtacctgatggaccgccattaggatcagcattgactgaaagattgga |
311 |
Q |
| |
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|||| |||||||||||||||| |||| |||||||||||||||| || |||||||||||||||| || |||||||||||||||||||||||||| ||||| |
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| T |
31579811 |
gtgaggttattggagaacattatatgattggtcctgtaattttaggtctggctgtacctgatgggcctccattaggatcagcattgactgaaaggttgga |
31579712 |
T |
|
| Q |
312 |
aacaatggtgtcaacaatatttttgccactgtactttctttatagtggtgctagtttcaaaattttcataattgatgctcgtacctttgcaattgtacaa |
411 |
Q |
| |
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|||| |||||| | | || |||||| |||| || |||| || |||||||| |||||| ||||| ||||| || |||||| ||||| ||| || ||| |
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| T |
31579711 |
tgcaattgtgtcagcggttttcttgccattgtatttcctttttaatggtgctaatttcaatatttttctaattaatactcgtagctttgtaatagtgcaa |
31579612 |
T |
|
| Q |
412 |
gttgttgctgtagttgcatatttgggg |
438 |
Q |
| |
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|||||||| || |||||| ||||||| |
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| T |
31579611 |
attgttgctatatttgcatctttgggg |
31579585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 78 - 320
Target Start/End: Complemental strand, 31564411 - 31564169
Alignment:
| Q |
78 |
tatgattgctttcacaatatgtgttttacgtcccataatgttttggatgataagacaaacaccagaagggaaacaaattaaagaatcgtacatattttcg |
177 |
Q |
| |
|
|||| ||| ||||| |||||||||| | | ||||||||| |||||||| ||||| ||||||||||||| |||| ||| |||||||| |||||| | || |
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| T |
31564411 |
tatggttgttttcataatatgtgttcttagacccataatgctttggatggtaagaaaaacaccagaaggaaaaccaatcaaagaatcatacataatgtct |
31564312 |
T |
|
| Q |
178 |
gtatttttaatgttattaggctgctcgttatttagtgaagttattggagaacattttatgcttggtcctgtaatttttggcatggctgtacctgatggac |
277 |
Q |
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|| |||||||||||| | |||||| | || ||||||| | || |||||||||| | | | || |||| ||||| || ||||||||||||||||||| |
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| T |
31564311 |
gtgtttttaatgttactcggctgcgcatttgttagtgagttaatcggagaacattatttagtcgggactgttattttcggtatggctgtacctgatggac |
31564212 |
T |
|
| Q |
278 |
cgccattaggatcagcattgactgaaagattggaaacaatggt |
320 |
Q |
| |
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| ||||||||||||||||||||||| |||||||| |||||||| |
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| T |
31564211 |
ctccattaggatcagcattgactgatagattggatacaatggt |
31564169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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