View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14508_high_5 (Length: 362)
Name: NF14508_high_5
Description: NF14508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14508_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 2573377 - 2573712
Alignment:
| Q |
18 |
ttatcaatacctaaaaaagttcaattagcgacagaaaatagaaatgaaaaaattgaattaatatgcaattatgatgtctctaacactgagagacggactt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
2573377 |
ttatcaatacctaaaaaagttcaattagcgacagaaaatagaaatgaaaaaattgaattactatgcaattatgatgtctctaacacatagagacggactt |
2573476 |
T |
|
| Q |
118 |
catgnnnnnnngtatcttaacttttcgtcgctgattcaacttttttctgaatagtattaattgaatggaatgagataaagggttaaagtataattacaat |
217 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2573477 |
catgtttttttgtatcttaacttttcgtcgctgattcaacttttttctgaatagtattaattgaatggaatgagataaagggttaaagtataattacaat |
2573576 |
T |
|
| Q |
218 |
cctccaagtgttattgaaattccaactgaataaacagtaccacctttagcaccatgatacatgaccattctgctaccataatatgacatcaaagaccata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2573577 |
cctccaagtgttattgaaattccaactgaataaacagtaccacctttagcaccatgatacatgaccattctgctaccataatatgacatcaaagaccata |
2573676 |
T |
|
| Q |
318 |
ccgcaaaaacaagaccattgcttcctatgcctatgc |
353 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| |
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|
| T |
2573677 |
cagcaaaaacaagaccattgcttcctatgcctatgc |
2573712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 31 - 350
Target Start/End: Original strand, 2600866 - 2601188
Alignment:
| Q |
31 |
aaaaagttcaattagcgacagaaaatagaaatgaaaaaattgaattaatatgcaatt-atgatgtctctaacactga--gagacggacttcatgnnnnnn |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| || | | ||||| ||||| | ||||||||||||||| |
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| T |
2600866 |
aaaaagttcaattagcgacagaaaatagaaatgaaaaaattgaattaatctgcatttgagggtgtcttcaacacatatagagacggacttcatgtttatc |
2600965 |
T |
|
| Q |
128 |
ngtatcttaacttttcgtcgctgattcaacttttttctgaatagtattaattgaatggaatgagataaagggttaaagtataattacaa-tcctccaagt |
226 |
Q |
| |
|
|| |||||||||||||||| |||||||| ||||| || | || |||||||||||||||||||||||||||||||||||||||||| || ||| |||| | |
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| T |
2600966 |
tgtctcttaacttttcgtcgttgattcaaattttt-ctcagtattattaattgaatggaatgagataaagggttaaagtataattaaaaatccaccaatt |
2601064 |
T |
|
| Q |
227 |
gttattgaaattccaactgaataaacagtaccacctttagcaccatgatacatgaccattctgctaccataatatgacatcaaagaccataccgcaaaaa |
326 |
Q |
| |
|
| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| |
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| T |
2601065 |
gcgattgaaactccaactgaataaacggtaccacctttagcaccatgatacatgaccattctgctaccataataggacatcaacgaccatacggcaaaaa |
2601164 |
T |
|
| Q |
327 |
caagaccattgcttcctatgccta |
350 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
2601165 |
caagaccattgcttcctatgccta |
2601188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 190 - 350
Target Start/End: Complemental strand, 2619358 - 2619198
Alignment:
| Q |
190 |
agataaagggttaaagtataattacaatcctccaagtgttattgaaattccaactgaataaacagtaccacctttagcaccatgatacatgaccattctg |
289 |
Q |
| |
|
|||| |||||| || ||||| |||| |||| ||||||| ||||||| |||||| | | | ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2619358 |
agatgaagggtaaaggtatacttacgatccaccaagtgctattgaatatccaacagcaaatacagtaccacctttagcaccatgatacatgaccattctg |
2619259 |
T |
|
| Q |
290 |
ctaccataatatgacatcaaagaccataccgcaaaaacaagaccattgcttcctatgccta |
350 |
Q |
| |
|
||||||||||| | ||||||||||||||| ||||||| ||||||||||||||||||||||| |
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|
| T |
2619258 |
ctaccataataggccatcaaagaccatacagcaaaaagaagaccattgcttcctatgccta |
2619198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 185 - 346
Target Start/End: Original strand, 2645804 - 2645965
Alignment:
| Q |
185 |
gaatgagataaagggttaaagtataattacaatcctccaagtgttattgaaattccaactgaataaacagtaccacctttagcaccatgatacatgacca |
284 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||| || ||| |||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
2645804 |
gaatgagataaagggtaaaagtataattacaatccaccaagtgctaaggaagctccaacattataaacagtaccacctttagcaccatgatacatgacca |
2645903 |
T |
|
| Q |
285 |
ttctgctaccataatatgacatcaaagaccataccgcaaaaacaagaccattgcttcctatg |
346 |
Q |
| |
|
|||||||||||||||| | ||| ||||| || |||||||||| |||||||||||||||| |
|
|
| T |
2645904 |
ttctgctaccataataagtcataaaagaagctattgcaaaaacaacaccattgcttcctatg |
2645965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 190 - 346
Target Start/End: Complemental strand, 2585667 - 2585511
Alignment:
| Q |
190 |
agataaagggttaaagtataattacaatcctccaagtgttattgaaattccaactgaataaacagtaccacctttagcaccatgatacatgaccattctg |
289 |
Q |
| |
|
|||| |||||| || ||||| |||| |||| ||| || || ||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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|
| T |
2585667 |
agatgaagggtaaaggtatacttacgatccagcaattgctaatgaaaatccaactgaataaacggtaccacctttagcaccatgatacataaccattctg |
2585568 |
T |
|
| Q |
290 |
ctaccataatatgacatcaaagaccataccgcaaaaacaagaccattgcttcctatg |
346 |
Q |
| |
|
||||||||||||| ||| |||||||||| |||||| || |||||||||||||||| |
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|
| T |
2585567 |
ctaccataatatgccataaaagaccatatagcaaaattaacaccattgcttcctatg |
2585511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 167 - 346
Target Start/End: Original strand, 2678004 - 2678183
Alignment:
| Q |
167 |
aatagtattaattgaatggaatgagataaagggttaaagtataattacaatcctccaagtgttattgaaattccaactgaataaacagtaccacctttag |
266 |
Q |
| |
|
|||||||| |||||||| ||||| | ||||||| || |||| ||||||||| ||||||| || ||| |||||| | | | |||||||||||||||| |
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|
| T |
2678004 |
aatagtatgaattgaataaaatgatacaaagggtaaagatatacttacaatccaccaagtgctaatgatgctccaacagcaaatacagtaccacctttag |
2678103 |
T |
|
| Q |
267 |
caccatgatacatgaccattctgctaccataatatgacatcaaagaccataccgcaaaaacaagaccattgcttcctatg |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||| || ||||||| |||||||||| |||||||||||||||| |
|
|
| T |
2678104 |
caccatgatacatgaccattctgctaccataaaaggacataaaggaccatatagcaaaaacaacaccattgcttcctatg |
2678183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 171 - 346
Target Start/End: Complemental strand, 2432197 - 2432022
Alignment:
| Q |
171 |
gtattaattgaatggaatgagataaagggttaaagtataattacaatcctccaagtgttattgaaattccaactgaataaacagtaccacctttagcacc |
270 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| |||||| ||||||||| |||| || || || | ||||||| | | || ||||| ||||||||||| |
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|
| T |
2432197 |
gtatcaattgaacggaatgagataaagggtattagtatacttacaatccaccaattgctaatgttactccaactacaaatactgtaccgcctttagcacc |
2432098 |
T |
|
| Q |
271 |
atgatacatgaccattctgctaccataatatgacatcaaagaccataccgcaaaaacaagaccattgcttcctatg |
346 |
Q |
| |
|
|||||||||||||||| |||||||||| || | || |||||||||| ||| | |||| |||||||||||||||| |
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|
| T |
2432097 |
atgatacatgaccattatgctaccatagtagaatattaaagaccatatagcatagacaacaccattgcttcctatg |
2432022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 2448152 - 2448087
Alignment:
| Q |
251 |
acagtaccacctttagcaccatgatacatgaccattctgctaccataatatgacatcaaagaccat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| |
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|
| T |
2448152 |
acagtaccacctttagcaccatgatacatgaccattctactaccataatatgacataaaacaccat |
2448087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 282 - 347
Target Start/End: Complemental strand, 33801957 - 33801892
Alignment:
| Q |
282 |
ccattctgctaccataatatgacatcaaagaccataccgcaaaaacaagaccattgcttcctatgc |
347 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
33801957 |
ccattctgctaccataataggccatcaaagaccatacagcaaaaagaagaccattgcttcctatgc |
33801892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 282 - 347
Target Start/End: Original strand, 53664676 - 53664741
Alignment:
| Q |
282 |
ccattctgctaccataatatgacatcaaagaccataccgcaaaaacaagaccattgcttcctatgc |
347 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||| ||||||| ||||||||| |||||||||| |
|
|
| T |
53664676 |
ccattctgctaccataataggccatcaaagaccatacagcaaaaagaagaccattacttcctatgc |
53664741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 342
Target Start/End: Original strand, 17874177 - 17874312
Alignment:
| Q |
207 |
ataattacaatcctccaagtgttattgaaattccaactgaataaacagtaccacctttagcaccatgatacatgaccattctgctaccataatatgacat |
306 |
Q |
| |
|
||||||||||||| |||| ||||| || |||||||| | |||| || || |||||||||||||||||||| |||| | ||||||||||||| |||| |
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|
| T |
17874177 |
ataattacaatccaccaacagttatggatgctccaactgcaaaaactgtccctcctttagcaccatgatacataaccaatttgctaccataatagcacat |
17874276 |
T |
|
| Q |
307 |
caaagaccataccgcaaaaacaagaccattgcttcc |
342 |
Q |
| |
|
|| ||||| | ||||| |||| |||||||||||| |
|
|
| T |
17874277 |
gaaggaccaaattgcaaagacaacaccattgcttcc |
17874312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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