View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14508_low_1 (Length: 706)

Name: NF14508_low_1
Description: NF14508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14508_low_1
NF14508_low_1
[»] chr2 (7 HSPs)
chr2 (130-666)||(4473371-4473904)
chr2 (1-63)||(4473242-4473304)
chr2 (385-448)||(41287932-41287995)
chr2 (155-214)||(31840343-31840403)
chr2 (141-206)||(41288142-41288207)
chr2 (385-444)||(31840271-31840330)
chr2 (1-54)||(31840488-31840541)
[»] chr4 (7 HSPs)
chr4 (229-347)||(39934150-39934268)
chr4 (142-213)||(33266518-33266589)
chr4 (385-445)||(33266603-33266663)
chr4 (142-214)||(30333097-30333168)
chr4 (385-446)||(30333181-30333242)
chr4 (1-44)||(30333045-30333088)
chr4 (284-339)||(31854860-31854915)
[»] chr1 (2 HSPs)
chr1 (141-214)||(7054578-7054651)
chr1 (385-450)||(7054664-7054728)
[»] chr3 (2 HSPs)
chr3 (147-214)||(30265675-30265742)
chr3 (394-449)||(10866906-10866961)
[»] chr8 (5 HSPs)
chr8 (365-446)||(38587840-38587921)
chr8 (142-214)||(38587776-38587847)
chr8 (385-442)||(35387744-35387801)
chr8 (1-54)||(38587654-38587707)
chr8 (171-214)||(35387814-35387857)
[»] chr7 (4 HSPs)
chr7 (365-448)||(39999038-39999121)
chr7 (149-214)||(32136043-32136108)
chr7 (385-427)||(32136121-32136163)
chr7 (399-448)||(21256836-21256885)
[»] chr5 (2 HSPs)
chr5 (140-214)||(13376854-13376928)
chr5 (281-362)||(2225231-2225315)


Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 130 - 666
Target Start/End: Original strand, 4473371 - 4473904
Alignment:
Q  130 tctgatgtgtaggacctacttagaataaattaagaacaaatattgtatttttgcattggagtaaaactacatggttgttcttgaagggagaagatcatcg 229  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4473371 tctgaagtgtaggacctacttagaataaattaagaacaaatattgtatttttgcattggagtaaaactacatggttgttcttgaagggataagatcatcg 4473470  T
Q  230 acatgagagtgtagtggattaacaaccccacatttttctacaattgacttagtcaaaattattaaataaccgttcaatggtgtagattggcactggactg 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4473471 acatgagagtgtagtggattaacaaccccacatttttctacaattgacttagtcaaaattattaaataaccgttcaatggtgtagattggcactggactg 4473570  T
Q  330 tatccagtgaaaaattcactaagaatccccatctattcttgaatctccagatggaaatgatggacccatcaaaatgcttgaagaacataaatcttgtttt 429  Q
    |||| | | |           ||||||||||||| |||||||||| ||| |||| |||||||||||||||||||||||| ||||||||||||||| ||||    
T  4473571 tatctactaa----------gagaatccccatctgttcttgaatccccatatggcaatgatggacccatcaaaatgcttaaagaacataaatcttatttt 4473660  T
Q  430 agcattgtagatgctctaagactaattaaaatacgaaaacatgttacaataggcgcataacctttttt-----attagttttgcaatnnnnnnnggttat 524  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||     |||| |||||||||       ||||||    
T  4473661 agcattgtagatgctctatgactaattaaaatacgaaaacatgttacaatagccgcataaccttttttttttaattatttttgcaataaaaaaaggttat 4473760  T
Q  525 ggcttttaaattgataaccacattcctcgaataggtatattgatataccgggtttaattattt--nnnnnnntatcgtatttaatcttaaaagccttaac 622  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||    
T  4473761 ggcttttaaattgataaccacattcctcgaatatgtatattgatataccgggtttaattatttaaaaaaaaatatcgtatttaatcttaaaagccttaac 4473860  T
Q  623 ttttattccacatagagaatataacattaatcctcgctataact 666  Q
    |||||||||||||||||||||||||||||||| |||||| ||||    
T  4473861 ttttattccacatagagaatataacattaatcatcgctacaact 4473904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 4473242 - 4473304
Alignment:
Q  1 catgttggagaacggttctccctggagaatattggagaacactgttttctgcattaacttgtc 63  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4473242 catgttggagaacggttctccctgaagaatattggagaacactgttttctgcattaacttgtc 4473304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 385 - 448
Target Start/End: Complemental strand, 41287995 - 41287932
Alignment:
Q  385 aatgatggacccatcaaaatgcttgaagaacataaatcttgttttagcattgtagatgctctaa 448  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41287995 aatgatggacccaccaaaatgcttgaagaacataaatcttgttttagcagtgtagatgctctaa 41287932  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 31840403 - 31840343
Alignment:
Q  155 taaattaagaacaaa-tattgtatttttgcattggagtaaaactacatggttgttcttgaa 214  Q
    ||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  31840403 taaattaagaaaaaaatattgtatttttgtattggagtaaaactacatggttgttcttgaa 31840343  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 41288207 - 41288142
Alignment:
Q  141 ggacctacttagaataaattaagaacaaatattgtatttttgcattggagtaaaactacatggttg 206  Q
    ||||| ||||| ||||||||||||||||  ||| |||||||| |||||||||||||||||||||||    
T  41288207 ggacccacttaaaataaattaagaacaagcattatatttttggattggagtaaaactacatggttg 41288142  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 31840330 - 31840271
Alignment:
Q  385 aatgatggacccatcaaaatgcttgaagaacataaatcttgttttagcattgtagatgct 444  Q
    ||||||||| |||  |||||| |||||| |||||||||||||| ||||||||||||||||    
T  31840330 aatgatggatccactaaaatgtttgaaggacataaatcttgttctagcattgtagatgct 31840271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 31840541 - 31840488
Alignment:
Q  1 catgttggagaacggttctccctggagaatattggagaacactgttttctgcat 54  Q
    ||||||||||||  ||||||||| ||||| ||||||||||||| ||||||||||    
T  31840541 catgttggagaatagttctccctagagaacattggagaacactattttctgcat 31840488  T

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Target: chr4 (Bit Score: 71; Significance: 9e-32; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 229 - 347
Target Start/End: Original strand, 39934150 - 39934268
Alignment:
Q  229 gacatgagagtgtagtggattaacaaccccacatttttctacaattgacttagtcaaaattattaaataaccgttcaatggtgtagattggcactggact 328  Q
    |||| ||||||| |||||| ||| ||||||| |||||||||||||||||||||||||||||||| || |||| || ||||||| |||||| |||||||||    
T  39934150 gacaggagagtgcagtggaataataaccccatatttttctacaattgacttagtcaaaattattgaaaaaccattaaatggtggagattgacactggact 39934249  T
Q  329 gtatccagtgaaaaattca 347  Q
    ||||||| |||||||||||    
T  39934250 gtatccaatgaaaaattca 39934268  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 33266518 - 33266589
Alignment:
Q  142 gacctacttagaataaattaagaacaaatattgtatttttgcattggagtaaaactacatggttgttcttga 213  Q
    |||| ||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||  ||||||||||    
T  33266518 gacccacttaaaataaattaagaacaaacattgtaattttgcattggagtaaaactacatatttgttcttga 33266589  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 385 - 445
Target Start/End: Original strand, 33266603 - 33266663
Alignment:
Q  385 aatgatggacccatcaaaatgcttgaagaacataaatcttgttttagcattgtagatgctc 445  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||| |||| ||||||||||||    
T  33266603 aatgatggacccaccaaaatgcttgaaaaacataaattttgttctagctttgtagatgctc 33266663  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 30333097 - 30333168
Alignment:
Q  142 gacctacttagaataaattaagaacaaatattgtatttttgcattggagtaaaactacatggttgttcttgaa 214  Q
    |||| |||||||||||| ||| |||||| |||||||||| ||||| ||||||||||| ||| |||||||||||    
T  30333097 gacccacttagaataaactaaaaacaaacattgtatttt-gcattcgagtaaaactatatgattgttcttgaa 30333168  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 385 - 446
Target Start/End: Original strand, 30333181 - 30333242
Alignment:
Q  385 aatgatggacccatcaaaatgcttgaagaacataaatcttgttttagcattgtagatgctct 446  Q
    ||||||||||||| |||||||||||||||||||||   || || ||||||| ||||||||||    
T  30333181 aatgatggacccaccaaaatgcttgaagaacataagcttttttctagcattttagatgctct 30333242  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 30333045 - 30333088
Alignment:
Q  1 catgttggagaacggttctccctggagaatattggagaacactg 44  Q
    |||||||||||||||||||||||| |||| |||| |||||||||    
T  30333045 catgttggagaacggttctccctgaagaacattgaagaacactg 30333088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 339
Target Start/End: Complemental strand, 31854915 - 31854860
Alignment:
Q  284 aaaattattaaataaccgttcaatggtgtagattggcactggactgtatccagtga 339  Q
    ||||||||||||||| |||| ||||||| ||||| |||||||||| | ||||||||    
T  31854915 aaaattattaaataatcgttgaatggtggagattagcactggactatctccagtga 31854860  T

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Target: chr1 (Bit Score: 66; Significance: 8e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 7054578 - 7054651
Alignment:
Q  141 ggacctacttagaataaattaagaacaaatattgtatttttgcattggagtaaaactacatggttgttcttgaa 214  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7054578 ggacccacttaaaataaattaagaacaaatattgtatttttgcattggagtaaaactacatggttgttcttgaa 7054651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 385 - 450
Target Start/End: Original strand, 7054664 - 7054728
Alignment:
Q  385 aatgatggacccatcaaaatgcttgaagaacataaatcttgttttagcattgtagatgctctaaga 450  Q
    ||||||||||||| | || ||||||||||||| |||||||||| ||||||||||||||||||||||    
T  7054664 aatgatggacccacccaa-tgcttgaagaacacaaatcttgttctagcattgtagatgctctaaga 7054728  T

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Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 30265675 - 30265742
Alignment:
Q  147 acttagaataaattaagaacaaatattgtatttttgcattggagtaaaactacatggttgttcttgaa 214  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30265675 acttagaataaattaagaacaaacattgtatttttgcattggagtaaaactacatggttgttcttgaa 30265742  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 394 - 449
Target Start/End: Original strand, 10866906 - 10866961
Alignment:
Q  394 cccatcaaaatgcttgaagaacataaatcttgttttagcattgtagatgctctaag 449  Q
    |||| |||||||||| |||||||||||| ||||| |||||||||||||||||||||    
T  10866906 cccaccaaaatgcttcaagaacataaatattgttctagcattgtagatgctctaag 10866961  T

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Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 365 - 446
Target Start/End: Original strand, 38587840 - 38587921
Alignment:
Q  365 ttcttgaatctccagatggaaatgatggacccatcaaaatgcttgaagaacataaatcttgttttagcattgtagatgctct 446  Q
    |||||||||| |||  ||| ||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||    
T  38587840 ttcttgaatccccaagtggcaatgatggacccaccaaaatgcttgaagaacataaatcttcttctagcattgtagatgctct 38587921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 38587776 - 38587847
Alignment:
Q  142 gacctacttagaataaattaagaacaaatattgtatttttgcattggagtaaaactacatggttgttcttgaa 214  Q
    |||| ||||| ||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||    
T  38587776 gacccacttataataaattaagaacaaacattgtatttttgcattggagtataacta-atggttgttcttgaa 38587847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 385 - 442
Target Start/End: Complemental strand, 35387801 - 35387744
Alignment:
Q  385 aatgatggacccatcaaaatgcttgaagaacataaatcttgttttagcattgtagatg 442  Q
    ||||||||||||| ||||||| ||||||||||||||| ||||| ||||||||||||||    
T  35387801 aatgatggacccaacaaaatgtttgaagaacataaattttgttctagcattgtagatg 35387744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 38587654 - 38587707
Alignment:
Q  1 catgttggagaacggttctccctggagaatattggagaacactgttttctgcat 54  Q
    ||||||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  38587654 catgttggagaacggttctccctggagaacattggataacaccgttttctgcat 38587707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 35387857 - 35387814
Alignment:
Q  171 attgtatttttgcattggagtaaaactacatggttgttcttgaa 214  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  35387857 attgtatttttgtattggagtaaaactacatggttgttcttgaa 35387814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 365 - 448
Target Start/End: Original strand, 39999038 - 39999121
Alignment:
Q  365 ttcttgaatctccagatggaaatgatggacccatcaaaatgcttgaagaacataaatcttgttttagcattgtagatgctctaa 448  Q
    ||||||||||||||  ||| ||||||| ||||| |||||||||||||||| | |||||||||| ||||||||||||||||||||    
T  39999038 ttcttgaatctccatgtggtaatgatgaacccaccaaaatgcttgaagaatacaaatcttgttctagcattgtagatgctctaa 39999121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 32136043 - 32136108
Alignment:
Q  149 ttagaataaattaagaacaaatattgtatttttgcattggagtaaaactacatggttgttcttgaa 214  Q
    |||||||||||||||||||||  ||||| ||||||||| |||||||| ||||||||||||||||||    
T  32136043 ttagaataaattaagaacaaaccttgtagttttgcattagagtaaaattacatggttgttcttgaa 32136108  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 385 - 427
Target Start/End: Original strand, 32136121 - 32136163
Alignment:
Q  385 aatgatggacccatcaaaatgcttgaagaacataaatcttgtt 427  Q
    |||| |||||||| ||||||||||||||||||||||| |||||    
T  32136121 aatggtggacccaccaaaatgcttgaagaacataaattttgtt 32136163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 448
Target Start/End: Complemental strand, 21256885 - 21256836
Alignment:
Q  399 caaaatgcttgaagaacataaatcttgttttagcattgtagatgctctaa 448  Q
    |||||||||| |||||||||||| |  ||||||||||| |||||||||||    
T  21256885 caaaatgcttcaagaacataaatatgattttagcattggagatgctctaa 21256836  T

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Target: chr5 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 13376928 - 13376854
Alignment:
Q  140 aggacctacttagaataaattaagaacaaatattgtatttttgcattggagtaaaactacatggttgttcttgaa 214  Q
    |||||| ||||| |||||||||| |||||| ||| |||||||||||| |||||||||||||||||||||||||||    
T  13376928 aggacccacttaaaataaattaaaaacaaacattatatttttgcattagagtaaaactacatggttgttcttgaa 13376854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 281 - 362
Target Start/End: Original strand, 2225231 - 2225315
Alignment:
Q  281 gtcaaaattattaaataaccgttcaatggtgtagattggcactggactgtatccagtgaaaaattcacta---agaatccccatc 362  Q
    |||||||||||||||||||| || ||||||| |||||||||||  ||| |||||| |||||  |||||||   ||||||||||||    
T  2225231 gtcaaaattattaaataaccattaaatggtgaagattggcactcaactatatccaatgaaattttcactacagagaatccccatc 2225315  T

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