View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14508_low_11 (Length: 260)

Name: NF14508_low_11
Description: NF14508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14508_low_11
NF14508_low_11
[»] chr4 (3 HSPs)
chr4 (1-251)||(21614527-21614785)
chr4 (106-230)||(34855874-34856005)
chr4 (171-225)||(48961947-48962001)
[»] chr8 (3 HSPs)
chr8 (1-172)||(12104792-12104965)
chr8 (106-213)||(27805858-27805973)
chr8 (1-43)||(3663658-3663702)
[»] chr5 (6 HSPs)
chr5 (1-118)||(18018829-18018948)
chr5 (104-233)||(31375364-31375501)
chr5 (108-233)||(20473829-20473962)
chr5 (171-243)||(22035676-22035748)
chr5 (171-243)||(22038902-22038974)
chr5 (78-243)||(43104120-43104292)
[»] chr3 (6 HSPs)
chr3 (60-243)||(23048678-23048867)
chr3 (1-118)||(26272685-26272805)
chr3 (171-243)||(10558267-10558339)
chr3 (171-243)||(28716987-28717059)
chr3 (2-48)||(7555511-7555559)
chr3 (104-233)||(17545043-17545179)
[»] chr2 (5 HSPs)
chr2 (106-233)||(3252067-3252202)
chr2 (5-94)||(23258564-23258655)
chr2 (171-243)||(35076731-35076803)
chr2 (171-243)||(35079989-35080061)
chr2 (171-238)||(6277390-6277457)
[»] chr1 (11 HSPs)
chr1 (31-118)||(42591167-42591254)
chr1 (171-243)||(14159522-14159594)
chr1 (171-243)||(28139069-28139141)
chr1 (171-243)||(28142320-28142392)
chr1 (104-233)||(8434896-8435034)
chr1 (2-58)||(14961436-14961494)
chr1 (3-118)||(17336731-17336849)
chr1 (106-238)||(25663317-25663457)
chr1 (105-249)||(26639746-26639898)
chr1 (171-238)||(1941557-1941624)
chr1 (52-173)||(28956843-28956963)
[»] chr7 (7 HSPs)
chr7 (105-243)||(7570088-7570234)
chr7 (105-243)||(7576503-7576649)
chr7 (104-238)||(18970818-18970960)
chr7 (171-243)||(1633912-1633984)
chr7 (171-243)||(1637157-1637229)
chr7 (171-243)||(44673252-44673324)
chr7 (104-173)||(18974057-18974126)
[»] chr6 (2 HSPs)
chr6 (108-233)||(11184297-11184430)
chr6 (171-225)||(27315696-27315750)


Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 21614785 - 21614527
Alignment:
Q  1 attcatgtaatgttgttttcttttaatagttatttgtgcattagccatcaatagctaagtttcaatttattaggtctgagatgattttgttctagctttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21614785 attcatgtaatgttgttttcttttaatagttatttgtgcattagccatcaatagctaagtttcaatttattaggtctgagattattttgttctagctttt 21614686  T
Q  101 ttgccatgtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcg--------taatgattctgacccgatataatt 192  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||        | ||||||||||||||||||||||    
T  21614685 ttgccatgtaatatgtaactctgaattattatgattgttattctagtttattcagtataaattgtgcgtgatgattttatgattctgacccgatataatt 21614586  T
Q  193 gagcttagagtttatatgactactgacactagcttataactttgacctattgatgatgt 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21614585 gagcttagagtttatatgactactgacactagcttataactttgacctatttatgatgt 21614527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 230
Target Start/End: Complemental strand, 34856005 - 34855874
Alignment:
Q  106 atgtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgtaatgattct-------gacccgatataattgagctt 198  Q
    |||||||||||||||||||||||| |||| |||||||   |||||||||| ||||||| ||||||||| || |       ||||| ||| |||||| |||    
T  34856005 atgtaatatgtaactctgaattatcatgaatgttatttcagtttattcagtataaattatgcgtaatgcttttatgattcgacccaataaaattgatctt 34855906  T
Q  199 agagtttatatgactactgacactagcttata 230  Q
    |||| ||| ||||||| |||||| ||||||||    
T  34855905 agagattacatgactaatgacaccagcttata 34855874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 48962001 - 48961947
Alignment:
Q  171 atgattctgacccgatataattgagcttagagtttatatgactactgacactagc 225  Q
    ||||||||||||| ||||||||||    ||||||||||||||||||||| |||||    
T  48962001 atgattctgacccaatataattgattcaagagtttatatgactactgacgctagc 48961947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 12104965 - 12104792
Alignment:
Q  1 attcatgtaatgttgttttcttttaat--agttatttgtgcattagccatcaatagctaagtttcaatttattaggtctgagatgattttgttctagctt 98  Q
    |||||||||||||||||||||||||||  ||||||||||||||||| ||| | |||||||||||||||| |||||||||||||||||| |||||||||||    
T  12104965 attcatgtaatgttgttttcttttaatctagttatttgtgcattagtcatgagtagctaagtttcaattgattaggtctgagatgattctgttctagctt 12104866  T
Q  99 ttttgccatgtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgtaat 172  Q
    ||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||    
T  12104865 tttggccatgtaatttgtaactctgaattattatgattgttattctagtttattcaatataaattgtgcgtaat 12104792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 213
Target Start/End: Complemental strand, 27805973 - 27805858
Alignment:
Q  106 atgtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgta--------atgattctgacccgatataattgagct 197  Q
    ||||||| | |||||||||||||| |||| ||||||||| | |||||||| ||||||||||||||        |||||||||| || |||||||||| ||    
T  27805973 atgtaatctataactctgaattatcatgaatgttattctaggttattcagtataaattgtgcgtaatgcttttatgattctgatccaatataattgatct 27805874  T
Q  198 tagagtttatatgact 213  Q
    ||||| ||||||||||    
T  27805873 tagagattatatgact 27805858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 3663702 - 3663658
Alignment:
Q  1 attcatgtaatgttgttttctttt--aatagttatttgtgcatta 43  Q
    ||||||||||||||||||||||||  | |||||||||||||||||    
T  3663702 attcatgtaatgttgttttcttttacattagttatttgtgcatta 3663658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 18018829 - 18018948
Alignment:
Q  1 attcatgtaatgttgttttcttttaat--agttatttgtgcattagccatcaatagctaagtttcaatttattaggtctgagatgattttgttctagctt 98  Q
    ||||| |||||||||||||||||||||  | ||||||||||||||||||| | |||||||||||||||| ||||||||| |||||||| | |||||||||    
T  18018829 attcaagtaatgttgttttcttttaatctatttatttgtgcattagccatgagtagctaagtttcaattgattaggtctaagatgattatattctagctt 18018928  T
Q  99 ttttgccatgtaatatgtaa 118  Q
    |||  | || ||||||||||    
T  18018929 tttgtctatataatatgtaa 18018948  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 233
Target Start/End: Original strand, 31375364 - 31375501
Alignment:
Q  104 ccatgtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgta--------atgattctgacccgatataattgag 195  Q
    ||||||||| |||| ||||||||||||||||  |||||||| | ||||| || ||||||||||||||        |||||||||||||  |||||||||     
T  31375364 ccatgtaatctgtagctctgaattattatgaaagttattctaggttatttagtataaattgtgcgtaatgcttttatgattctgacccattataattgat 31375463  T
Q  196 cttagagtttatatgactactgacactagcttataact 233  Q
    ||||||| ||||| |||| ||||||| |||||||||||    
T  31375464 cttagagattataggactgctgacaccagcttataact 31375501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 108 - 233
Target Start/End: Complemental strand, 20473962 - 20473829
Alignment:
Q  108 gtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgta--------atgattctgacccgatataattgagctta 199  Q
    ||||| |||| ||||||||||||||||  |||||||| |||||||||| |||||||||| |||        ||||||||||| | |||||||||  ||||    
T  20473962 gtaatctgtagctctgaattattatgaaagttattctagtttattcagtataaattgtgtgtaatgcttttatgattctgactcaatataattgttctta 20473863  T
Q  200 gagtttatatgactactgacactagcttataact 233  Q
    ||| || ||||||| ||||||| |||||||||||    
T  20473862 gagattgtatgactgctgacaccagcttataact 20473829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 22035676 - 22035748
Alignment:
Q  171 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 243  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||| | ||||| |||| ||||    
T  22035676 atgattctgacccaatataattgattttagagtatatatgactactgacactagcgtttaactctgacatatt 22035748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 22038902 - 22038974
Alignment:
Q  171 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 243  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||| | ||||| |||| ||||    
T  22038902 atgattctgacccaatataattgattttagagtatatatgactactgacactagcgtttaactctgacatatt 22038974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 243
Target Start/End: Complemental strand, 43104292 - 43104120
Alignment:
Q  78 gagatgattttgttctagct--tttttgccatgtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgtaatg-- 173  Q
    ||||||||||||||||||||  | |||   ||||||  ||||||||| |||  |||||| ||| ||||| |||||||||| ||||||||| | |||||      
T  43104292 gagatgattttgttctagctcatgttt---atgtaacctgtaactcttaatctttatgaatgtcattctagtttattcagtataaattgttcttaatgct 43104196  T
Q  174 ------attctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 243  Q
          ||| |||||| ||||||||||  ||||||| |||||||| |||||||||||| || |||| |||| ||||    
T  43104195 tttatgattttgacccaatataattgattttagagtatatatgaccactgacactagcgtaaaactctgacatatt 43104120  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 243
Target Start/End: Original strand, 23048678 - 23048867
Alignment:
Q  60 tttcaatttattaggtctgagatgattttgttctagcttttttgccatgtaatatgtaactctgaattattatgattgttattctcgtttattcagcata 159  Q
    |||| ||| ||||||||  |||||||||||||||||||  |   | ||||||| |||||||||||||||| |||| ||||||||  ||| |||||| |||    
T  23048678 tttctattgattaggtcatagatgattttgttctagctcatga-ctatgtaatctgtaactctgaattatcatgaatgttattcaggtt-attcagtata 23048775  T
Q  160 aattgtgcgtaatg--------attctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 243  Q
    ||||||||||||||        |||||||||| |||||||||| ||||||| || ||||||| ||||||| ||||||||||| |||| ||||    
T  23048776 aattgtgcgtaatgcttttatgattctgacccaatataattgatcttagagattgtatgactgctgacaccagcttataactctgacatatt 23048867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 26272685 - 26272805
Alignment:
Q  1 attcatgtaatgttgttttcttttaat--agttatttgtgcattagccatcaatagctaagtttcaatttattaggtctgagatgattttgttctagctt 98  Q
    ||||||| |||||||||||||||||||  |||||||||||||||| |||| | ||||||| |||   || ||||| ||| |||||| |||||||||  ||    
T  26272685 attcatgcaatgttgttttcttttaatttagttatttgtgcattaaccatgagtagctaaattttctttgattagatcttagatgaatttgttctaagtt 26272784  T
Q  99 ttttgcc-atgtaatatgtaa 118  Q
    |||| || |||||||||||||    
T  26272785 ttttaccaatgtaatatgtaa 26272805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 10558339 - 10558267
Alignment:
Q  171 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 243  Q
    |||||| |||||| ||||||||||  ||||||| ||||||||||||||||||||| | ||||| |||| ||||    
T  10558339 atgattatgacccaatataattgattttagagtatatatgactactgacactagcgtttaactctgacatatt 10558267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 28717059 - 28716987
Alignment:
Q  171 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 243  Q
    |||||||| |||| ||||||||||   ||||| ||||||||||| |||||| |||||||||||||||| ||||    
T  28717059 atgattctaacccaatataattgattctagagattatatgactattgacaccagcttataactttgacttatt 28716987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 7555559 - 7555511
Alignment:
Q  2 ttcatgtaatgttgttttcttttaa--tagttatttgtgcattagccat 48  Q
    |||||||||||||||||||||||||  ||||||||||||||||| ||||    
T  7555559 ttcatgtaatgttgttttcttttaatttagttatttgtgcattatccat 7555511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 233
Target Start/End: Complemental strand, 17545179 - 17545043
Alignment:
Q  104 ccatgtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgta--------atgattctgacccgatataattgag 195  Q
    |||| |||| |||| ||||||||||||||||  |||||||| | |||||||| |||||||||| |||        |||||| |||||| ||||||||||     
T  17545179 ccatttaatctgtagctctgaattattatgaaagttattctag-ttattcagtataaattgtgtgtaatgcttttatgattatgacccaatataattgat 17545081  T
Q  196 cttagagtttatatgactactgacactagcttataact 233  Q
     |||||| ||||| ||||  |||||| |||||||||||    
T  17545080 tttagagattataggactgttgacaccagcttataact 17545043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 233
Target Start/End: Original strand, 3252067 - 3252202
Alignment:
Q  106 atgtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgtaatg--------attctgacccgatataattgagct 197  Q
    ||||||| |||||||||||||||| |||| ||||||||  | ||||| || |||||||||||||||||        ||||||| || |||||||||| ||    
T  3252067 atgtaatctgtaactctgaattatcatgaatgttattccaggttattaagtataaattgtgcgtaatgcttttatgattctgatccaatataattgatct 3252166  T
Q  198 tagagtttatatgactactgacactagcttataact 233  Q
    ||||| |||||||||| ||||||| |||||||||||    
T  3252167 tagagattatatgactgctgacaccagcttataact 3252202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 23258564 - 23258655
Alignment:
Q  5 atgtaatgttgttttcttttaat--agttatttgtgcattagccatcaatagctaagtttcaatttattaggtctgagatgattttgttcta 94  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||| | ||||| |  ||||||| ||||||||| ||||| || |||||||    
T  23258564 atgtaatgttgttttcttttaatctagttatttgtggattagccatgagtagcttaacttcaattgattaggtctcagatgtttatgttcta 23258655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 35076731 - 35076803
Alignment:
Q  171 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 243  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||| | ||||| |||| ||||    
T  35076731 atgattctgacccaatataattgattttagagtatatatgactactgacactagcgtttaactctgacatatt 35076803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 35079989 - 35080061
Alignment:
Q  171 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 243  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||| | ||||| |||| ||||    
T  35079989 atgattctgacccaatataattgattttagagtatatatgactactgacactagcgtttaactctgacatatt 35080061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 6277457 - 6277390
Alignment:
Q  171 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgac 238  Q
    ||||||||||||| ||||||||||    ||||||||||||||||||||||||||| | ||||| ||||    
T  6277457 atgattctgacccaatataattgattcaagagtttatatgactactgacactagcgtgtaactctgac 6277390  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 42591254 - 42591167
Alignment:
Q  31 tatttgtgcattagccatcaatagctaagtttcaatttattaggtctgagatgattttgttctagcttttttgccatgtaatatgtaa 118  Q
    |||||||||||||||||  | |||||||||||||||| |||  ||||||||||||| |||||||| ||||| |||||||||| |||||    
T  42591254 tatttgtgcattagccacgagtagctaagtttcaattgattgagtctgagatgattctgttctagttttttggccatgtaatttgtaa 42591167  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 14159594 - 14159522
Alignment:
Q  171 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 243  Q
    ||||||||||||| |||||| |||  ||||||| ||||||||||||||||||||| ||||||| |||| ||||    
T  14159594 atgattctgacccaatataactgattttagagtatatatgactactgacactagcgtataactctgacatatt 14159522  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 28139141 - 28139069
Alignment:
Q  171 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 243  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||| | ||||| |||| ||||    
T  28139141 atgattctgacccaatataattgattttagagtatatatgactactgacactagcgtttaactctgacatatt 28139069  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 28142392 - 28142320
Alignment:
Q  171 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 243  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||| | ||||| |||| ||||    
T  28142392 atgattctgacccaatataattgattttagagtatatatgactactgacactagcgtttaactctgacatatt 28142320  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 233
Target Start/End: Original strand, 8434896 - 8435034
Alignment:
Q  104 ccatgtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgtaatg--------attctgacccga-tataattga 194  Q
    ||||||||| |||| ||||||||||||||||  |||||| | |||||||||| ||| |||| | ||||||        |||||||||| | |||||||||    
T  8434896 ccatgtaatgtgtagctctgaattattatgaaagttattatagtttattcagtatagattgcgtgtaatgcttttatgattctgaccccaatataattga 8434995  T
Q  195 gcttagagtttatatgactactgacactagcttataact 233  Q
     ||||||| ||||| |||| ||||||| |||||||||||    
T  8434996 tcttagagattataggactgctgacaccagcttataact 8435034  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 14961436 - 14961494
Alignment:
Q  2 ttcatgtaatgttgttttctttt--aatagttatttgtgcattagccatcaatagctaa 58  Q
    |||||||||||||||||||||||  | |||||||||||||||||||||| | |||||||    
T  14961436 ttcatgtaatgttgttttcttttacattagttatttgtgcattagccatgactagctaa 14961494  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 17336731 - 17336849
Alignment:
Q  3 tcatgtaatgttgttttcttttaat--agttatttgtgcattagccatcaatagctaagtttcaatttattaggtctgagatgattttgttct-agcttt 99  Q
    |||||||||| ||||||||||||||  ||||||||||||||||||| | | ||| |||||||  ||| |||| ||||  ||||| |||||||| ||||||    
T  17336731 tcatgtaatgctgttttcttttaatctagttatttgtgcattagccttgagtagttaagttttcattgattaagtcttggatgaatttgttctaagcttt 17336830  T
Q  100 tttgccatgtaatatgtaa 118  Q
    |   | |||||||||||||    
T  17336831 tgaccaatgtaatatgtaa 17336849  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 238
Target Start/End: Complemental strand, 25663457 - 25663317
Alignment:
Q  106 atgtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgtaatgatt--------ctgacccgatataattgagct 197  Q
    |||||| |||||||||| |||  |||||| ||| ||||| |||||||||| ||||||||| | ||||| ||        ||||||| |||||| |||  |    
T  25663457 atgtaacatgtaactcttaatctttatgaatgtcattctagtttattcagtataaattgttcttaatgcttttatgtttctgacccaatataaatgattt 25663358  T
Q  198 tagagtttatatgactactgacactagcttataactttgac 238  Q
    |||||| ||||||||||||||||||||| | ||||| ||||    
T  25663357 tagagtatatatgactactgacactagcgtgtaactctgac 25663317  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 249
Target Start/End: Complemental strand, 26639898 - 26639746
Alignment:
Q  105 catgtaatatgtaactctgaa-ttattatgattgttattctcgtttattcagcataaattgtgcgtaatg--------attctgacccgatataattgag 195  Q
    |||||||||||||||||| || |||||||||||  |||||| |||||||  | ||||||||||| |||||        ||||||| || ||| ||||||     
T  26639898 catgtaatatgtaactctaaaattattatgattactattctagtttattt-gtataaattgtgcctaatgcttttatgattctgaaccaatacaattgaa 26639800  T
Q  196 cttagagtttatatgactactgacactagcttataactttgacctattgatgat 249  Q
    |||| || |||||||| | ||||||| | ||||||||||||| ||||| |||||    
T  26639799 cttatagattatatgattgctgacaccaacttataactttgatctatttatgat 26639746  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 1941557 - 1941624
Alignment:
Q  171 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgac 238  Q
    ||||||| ||||| ||||||||||    ||||||||||||||||||||||||||| | ||||| ||||    
T  1941557 atgattcggacccaatataattgattcaagagtttatatgactactgacactagcatgtaactctgac 1941624  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 173
Target Start/End: Original strand, 28956843 - 28956963
Alignment:
Q  52 tagctaagtttcaatttattaggtctgagatgattttgttctagcttttttgccatgtaatatgtaactctgaattattatgattgttattctcgtttat 151  Q
    ||||||| |||| ||| ||||||||  |||||||| ||||||||||  |   | ||||||| ||||| |||||||||||| || |||||||   ||||||    
T  28956843 tagctaattttctattaattaggtcatagatgattctgttctagctcatgatc-atgtaatctgtaattctgaattattaagaatgttatttcagtttat 28956941  T
Q  152 tcagcataaattgtgcgtaatg 173  Q
    |||| ||||||| || ||||||    
T  28956942 tcagtataaattatgtgtaatg 28956963  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 243
Target Start/End: Original strand, 7570088 - 7570234
Alignment:
Q  105 catgtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgtaatg--------attctgacccgatataattgagc 196  Q
    |||||||||||||||||| ||||||||||| |||||||    ||||||||| ||||||| || ||||||        |||||||||| |||||||||| |    
T  7570088 catgtaatatgtaactctaaattattatgaatgttatttcattttattcagtataaattatgtgtaatgcttttatgattctgacccaatataattgatc 7570187  T
Q  197 ttagagtttatatgactactgacactagcttataactttgacctatt 243  Q
    |||||| ||||| ||||  |||||| |||||||||||  ||||||||    
T  7570188 ttagagattataggactgttgacaccagcttataactcagacctatt 7570234  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 243
Target Start/End: Original strand, 7576503 - 7576649
Alignment:
Q  105 catgtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgtaatg--------attctgacccgatataattgagc 196  Q
    |||||||||||||||||| ||||||||||| |||||||    ||||||||| ||||||| || ||||||        |||||||||| |||||||||| |    
T  7576503 catgtaatatgtaactctaaattattatgaatgttatttcattttattcagtataaattatgtgtaatgcttttatgattctgacccaatataattgatc 7576602  T
Q  197 ttagagtttatatgactactgacactagcttataactttgacctatt 243  Q
    |||||| ||||| ||||  |||||| |||||||||||  ||||||||    
T  7576603 ttagagattataggactgttgacaccagcttataactcagacctatt 7576649  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 238
Target Start/End: Complemental strand, 18970960 - 18970818
Alignment:
Q  104 ccatgtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgtaatg--------attctgacccgatataattgag 195  Q
    ||||||||| |||| |||||||| |||||||  |||||||| |||||||||  |||||||||| ||||||        |||||||||| ||||||||||     
T  18970960 ccatgtaatctgtagctctgaatcattatgaaagttattctagtttattcaatataaattgtgtgtaatgcttttatgattctgacccaatataattgat 18970861  T
Q  196 cttagagtttatatgactactgacactagcttataactttgac 238  Q
     |||||| || ||||||| || |||| ||||||||||| ||||    
T  18970860 attagagattgtatgactgctaacaccagcttataactctgac 18970818  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 1633984 - 1633912
Alignment:
Q  171 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 243  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||| | ||||| |||| ||||    
T  1633984 atgattctgacccaatataattgattttagagtatatatgactactgacactagcgtttaactctgacatatt 1633912  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 1637229 - 1637157
Alignment:
Q  171 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 243  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||| | ||||| |||| ||||    
T  1637229 atgattctgacccaatataattgattttagagtatatatgactactgacactagcgtttaactctgacatatt 1637157  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 44673324 - 44673252
Alignment:
Q  171 atgattctgacccgatataattgagcttagagtttatatgactactgacactagcttataactttgacctatt 243  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||| ||||||||| | ||||| |||| ||||    
T  44673324 atgattctgacccaatataattgattttagagtatatatgactaccgacactagcgtttaactctgacatatt 44673252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 18974126 - 18974057
Alignment:
Q  104 ccatgtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgtaatg 173  Q
    ||||||||| |||| ||||||||||||||||  ||||| || ||||||| |  |||||||||||||||||    
T  18974126 ccatgtaatctgtagctctgaattattatgaaagttatcctagtttatttaatataaattgtgcgtaatg 18974057  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 233
Target Start/End: Complemental strand, 11184430 - 11184297
Alignment:
Q  108 gtaatatgtaactctgaattattatgattgttattctcgtttattcagcataaattgtgcgta--------atgattctgacccgatataattgagctta 199  Q
    ||||| |||| ||||||||||||||||  |||||||| |||||||| | |||||||||| |||        ||||||||||| | ||||||||||  |||    
T  11184430 gtaatctgtagctctgaattattatgaaagttattctagtttattcggtataaattgtgtgtaatgcttttatgattctgactcaatataattgatatta 11184331  T
Q  200 gagtttatatgactactgacactagcttataact 233  Q
    ||| ||||| |||| ||||||| |||||||||||    
T  11184330 gagattataggactgctgacaccagcttataact 11184297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 27315696 - 27315750
Alignment:
Q  171 atgattctgacccgatataattgagcttagagtttatatgactactgacactagc 225  Q
    ||||||||||||| ||||||||||    |||||||||||||||||||| ||||||    
T  27315696 atgattctgacccaatataattgattcaagagtttatatgactactgaaactagc 27315750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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