View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14508_low_12 (Length: 245)
Name: NF14508_low_12
Description: NF14508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14508_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 23623230 - 23623469
Alignment:
| Q |
1 |
ttggagtaaaatgctctgcatagatgaaaatatcaacagtaacactcaccattcgagaaggcttaacagttataaaatggacaagcataaactgaagtgt |
100 |
Q |
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| T |
23623230 |
ttggagtaaaatgctctgcatagatgaaaatatcaacagtaacactcaccattccagaaggcttaacagtcataaaatggacaagcataaactgaagtgt |
23623329 |
T |
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| Q |
101 |
aagaaattaatcagttcaaacatgactcaccatcttgtgcatgttgttcaaaggttgaaaaatggttagaatgaacatcaaagtcgattttttcacgata |
200 |
Q |
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| T |
23623330 |
aagaaattattcagttcaaacatgactcaccatcttgtgcatgttgttcaaaggttgaaaaatggttagaatgaacatcaaagtcgattttttcacgata |
23623429 |
T |
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| Q |
201 |
aggtgacttgttagtgaagcagaagcgatatggtcctttg |
240 |
Q |
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| T |
23623430 |
aggtgacttgttagtgaagcagaagcgatatggtcctttg |
23623469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 100 - 191
Target Start/End: Original strand, 23618401 - 23618492
Alignment:
| Q |
100 |
taagaaattaatcagttcaaacatgactcaccatcttgtgcatgttgttcaaaggttgaaaaatggttagaatgaacatcaaagtcgatttt |
191 |
Q |
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| T |
23618401 |
taagaaattaatcagttcaaacatgactcatcatcttgtgcatgttgatcaaaggttgaaaaatggttagaatgaacatcaaagtcaatttt |
23618492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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