View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14508_low_13 (Length: 213)
Name: NF14508_low_13
Description: NF14508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14508_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 30408255 - 30408434
Alignment:
| Q |
18 |
gtaaaaactgcgacaagaaactttcatccaagtggtgaactcgatgaacgtggatttggtagggtattcaaggggtggatcgatgagcacacgcaagctc |
117 |
Q |
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| T |
30408255 |
gtaaaaactgcgacaagaaactttcatccaagtggtgaactcgatgaacgtggatttggtagggtattcaaggggtggatcgatgagcacatgcaagctc |
30408354 |
T |
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| Q |
118 |
ctacgaaaccaggtactggttttgttgttgctgtgatgatgtttaacaatgaaagcaaccaggaacatagtgaatggttg |
197 |
Q |
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| T |
30408355 |
ctacgaaaccaggtactggttttgttgttgctgtgatgatgtttaacaatgaaagcaaccaggaacatagtgaatggttg |
30408434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 37 - 174
Target Start/End: Original strand, 30411198 - 30411335
Alignment:
| Q |
37 |
actttcatccaagtggtgaactcgatgaacgtggatttggtagggtattcaaggggtggatcgatgagcacacgcaagctcctacgaaaccaggtactgg |
136 |
Q |
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| T |
30411198 |
actttcatccaagcggtcaagtggatgaacgtgggtttggtagtgtctttaaggggtggatcgatgagcacacgctagctcctactaaacaaggtactgg |
30411297 |
T |
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| Q |
137 |
ttttgttgttgctgtgatgatgtttaacaatgaaagca |
174 |
Q |
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| T |
30411298 |
ttatgttgttgctgttaagatgtttatcaaagaaagca |
30411335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 30421342 - 30421472
Alignment:
| Q |
67 |
gtggatttggtagggtattcaaggggtggatcgatgagcacacgcaagctcctacgaaaccaggtactggttttgttgttgctgtgatgatgtttaacaa |
166 |
Q |
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| T |
30421342 |
gtggatttggttgtgtatttaagggttggatcgatgagcacacactagctcctactaaaccaggtactggttttgttattgctgtcaagaggcttaacca |
30421441 |
T |
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| Q |
167 |
tgaaagcaaccaggaacatagtgaatggttg |
197 |
Q |
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| T |
30421442 |
agaaagcagtcagggacatagtgaatggttg |
30421472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 30404484 - 30404614
Alignment:
| Q |
67 |
gtggatttggtagggtattcaaggggtggatcgatgagcacacgcaagctcctacgaaaccaggtactggttttgttgttgctgtgatgatgtttaacaa |
166 |
Q |
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| T |
30404484 |
gtggatttggttgtgtatttaagggttggatcgatgagcacacactagccccgactaaacaaggtactggttttgccgtttctgtgaagaggctcaacga |
30404583 |
T |
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| Q |
167 |
tgaaagcaaccaggaacatagtgaatggttg |
197 |
Q |
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| T |
30404584 |
taaaagcaatcagggacatagtgaatggttg |
30404614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 30401136 - 30401246
Alignment:
| Q |
87 |
aaggggtggatcgatgagcacacgcaagctcctacgaaaccaggtactggttttgttgttgctgtgatgatgtttaacaatgaaagcaaccaggaacata |
186 |
Q |
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| T |
30401136 |
aaggggtggatcgatgagcacacgttaggccccactaaaccaggttctggtttgactgttgctgtgaagaagcttaacaatgcgagccaccaggaaccca |
30401235 |
T |
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| Q |
187 |
gtgaatggttg |
197 |
Q |
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| T |
30401236 |
gtgaatggttg |
30401246 |
T |
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