View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14508_low_14 (Length: 208)

Name: NF14508_low_14
Description: NF14508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14508_low_14
NF14508_low_14
[»] chr1 (7 HSPs)
chr1 (14-196)||(43473036-43473201)
chr1 (14-83)||(32035195-32035264)
chr1 (14-83)||(41770967-41771036)
chr1 (14-78)||(32035335-32035399)
chr1 (14-83)||(7731252-7731321)
chr1 (14-67)||(35078086-35078139)
chr1 (14-83)||(37392468-37392537)
[»] chr3 (5 HSPs)
chr3 (18-83)||(26243367-26243432)
chr3 (18-83)||(26121184-26121249)
chr3 (14-83)||(4333918-4333987)
chr3 (14-83)||(21631167-21631236)
chr3 (14-83)||(42371340-42371409)
[»] chr7 (6 HSPs)
chr7 (14-84)||(19628885-19628955)
chr7 (14-84)||(46735897-46735967)
chr7 (14-84)||(46736531-46736601)
chr7 (14-83)||(46369854-46369923)
chr7 (14-63)||(21690149-21690198)
chr7 (32-84)||(7668136-7668188)
[»] chr5 (6 HSPs)
chr5 (14-84)||(42859116-42859186)
chr5 (14-83)||(20405276-20405344)
chr5 (14-83)||(34992097-34992166)
chr5 (32-68)||(21112002-21112038)
chr5 (14-83)||(13861252-13861321)
chr5 (14-83)||(22497269-22497338)
[»] chr2 (3 HSPs)
chr2 (14-84)||(347679-347749)
chr2 (14-84)||(348301-348371)
chr2 (14-84)||(5602277-5602347)
[»] chr8 (2 HSPs)
chr8 (14-84)||(37745151-37745221)
chr8 (14-83)||(32094999-32095068)
[»] chr6 (1 HSPs)
chr6 (14-56)||(14911448-14911490)
[»] chr4 (4 HSPs)
chr4 (14-84)||(14203933-14204003)
chr4 (14-83)||(37082437-37082506)
chr4 (14-57)||(33881572-33881615)
chr4 (19-84)||(14204568-14204633)
[»] scaffold2013 (1 HSPs)
scaffold2013 (14-83)||(503-572)


Alignment Details
Target: chr1 (Bit Score: 89; Significance: 4e-43; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 43473201 - 43473036
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttctactaacaatataatcatgtgtttaatgg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||    
T  43473201 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatt----------------tcatgtgtttaatgg 43473118  T
Q  114 nnnnnnnngcaaaatttaaaacaatttgttccctccttctacttatgtatgacactcttttatgagttgcaggtgttggtgat 196  Q
            |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  43473117 -tctttttgcaaaatttaaaacaatttgtttcctctttctacttatgtatgacactcttttatgagttgcatgtgttggtgat 43473036  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 32035264 - 32035195
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 83  Q
    ||||||||||||||| |||||  |||||||| |||||||||||||||||||  ||| |||||||||||||    
T  32035264 aatatataaaaatcgcactcctccaaaatttcataattgtcctttttaaaacccatgatcttcttaattt 32035195  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 41770967 - 41771036
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 83  Q
    ||||||||||||||  | |||| |||||||| |||||  ||||| |||||| ||||||||||||||||||    
T  41770967 aatatataaaaatcaaagtccaccaaaatttcataataatccttattaaaactcattatcttcttaattt 41771036  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 32035399 - 32035335
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttctt 78  Q
    |||||||||||||| || | |||||||| || |||||||||||||||||||  ||| ||||||||    
T  32035399 aatatataaaaatcatatttcagcaaaaattcataattgtcctttttaaaacccataatcttctt 32035335  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 7731321 - 7731252
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 83  Q
    ||||||||||||||  | || | |||||||| |||||  ||||| |||||| ||||||||||||||||||    
T  7731321 aatatataaaaatcaaagtctaccaaaatttcataataatccttattaaaactcattatcttcttaattt 7731252  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 35078086 - 35078139
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatc 67  Q
    ||||||||||| || ||| ||| |||||||||||| ||||||||||| ||||||    
T  35078086 aatatataaaattcataccccaccaaaattttatagttgtccttttttaaaatc 35078139  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 37392468 - 37392537
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 83  Q
    ||||||||||||||  | || | |||||||| |||||  ||||| |||||| ||||||||||||||||||    
T  37392468 aatatataaaaatcaaagtctaccaaaatttcataataatccttattaaaactcattatcttcttaattt 37392537  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 26243432 - 26243367
Alignment:
Q  18 tataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 83  Q
    ||||||||| |||||| | |||| ||| |||||||||||||||||||||||||||||||| |||||    
T  26243432 tataaaaattgtactctaacaaattttcataattgtcctttttaaaaatcattatcttctcaattt 26243367  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 26121249 - 26121184
Alignment:
Q  18 tataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 83  Q
    ||||||||| |||||| | |||| ||| ||||||||||||||| |||||||||||||||| |||||    
T  26121249 tataaaaattgtactctaacaaattttcataattgtcctttttgaaaatcattatcttctcaattt 26121184  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 4333918 - 4333987
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 83  Q
    ||||||||||||||  | |||| |||||||| |||||  ||||| |||||| ||||||||||||||||||    
T  4333918 aatatataaaaatcaaagtccaccaaaatttcataataatccttattaaaactcattatcttcttaattt 4333987  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 21631167 - 21631236
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 83  Q
    ||||||||||||||  | |||| |||||||| |||||  ||||| |||||| ||||||||||||||||||    
T  21631167 aatatataaaaatcaaagtccaccaaaatttcataataatccttattaaaactcattatcttcttaattt 21631236  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 42371409 - 42371340
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 83  Q
    ||||||||||||||  | |||| |||||||| |||||  ||||| |||||| || |||||||||||||||    
T  42371409 aatatataaaaatcaaagtccaccaaaatttcataataatccttattaaaactcgttatcttcttaattt 42371340  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 19628885 - 19628955
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttc 84  Q
    ||||||||||||||  | |||| |||||||| ||||| |||||| |||||| |||||||||||||||||||    
T  19628885 aatatataaaaatcaaagtccaccaaaatttcataatcgtccttattaaaactcattatcttcttaatttc 19628955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 46735967 - 46735897
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttc 84  Q
    ||||||||||||||  | |||| |||||||| ||||| |||||| |||||| |||||||||||||||||||    
T  46735967 aatatataaaaatcaaagtccaccaaaatttcataatcgtccttattaaaactcattatcttcttaatttc 46735897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 46736601 - 46736531
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttc 84  Q
    ||||||||||||||  | |||| |||||||| |||||  ||||| |||||| |||||||||||||||||||    
T  46736601 aatatataaaaatcaaagtccaccaaaatttaataataatccttattaaaactcattatcttcttaatttc 46736531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 46369923 - 46369854
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 83  Q
    ||||||||||||||  | |||| |||||||| |||||  ||||| |||||| ||||||||||||||||||    
T  46369923 aatatataaaaatcaaagtccaccaaaatttcataataatccttattaaaactcattatcttcttaattt 46369854  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 21690149 - 21690198
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaa 63  Q
    ||||||||||||||||| ||||   |||||||||||||||| ||||||||    
T  21690149 aatatataaaaatcgtagtccatttaaattttataattgtcttttttaaa 21690198  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 7668188 - 7668136
Alignment:
Q  32 tccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttc 84  Q
    |||| |||||||| |||||  ||||| |||||| |||||||||||||||||||    
T  7668188 tccaccaaaatttcataataatccttattaaaactcattatcttcttaatttc 7668136  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 42859186 - 42859116
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttc 84  Q
    ||||||||||||||| | || |||||||||||| |||  |||||||||||| ||||||||| |||||||||    
T  42859186 aatatataaaaatcgaagtctagcaaaattttacaatcctcctttttaaaactcattatctccttaatttc 42859116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 20405344 - 20405276
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 83  Q
    |||||||||||||| || |||| |||||||| |||||  ||||| |||||| ||||||||||||||||||    
T  20405344 aatatataaaaatc-tagtccaccaaaatttcataataatccttattaaaactcattatcttcttaattt 20405276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 34992097 - 34992166
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 83  Q
    ||||||||||||||  | |||| |||||||| |||||  ||||| |||||| ||||||||||||||||||    
T  34992097 aatatataaaaatcaaagtccaccaaaatttcataataatccttattaaaactcattatcttcttaattt 34992166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 21112002 - 21112038
Alignment:
Q  32 tccagcaaaattttataattgtcctttttaaaaatca 68  Q
    |||| ||||||||||||||||||||||||||||||||    
T  21112002 tccaacaaaattttataattgtcctttttaaaaatca 21112038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 13861321 - 13861252
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 83  Q
    ||||||||||||||| | | ||||||||||| ||||||||| ||  ||||| |||| |||| ||||||||    
T  13861321 aatatataaaaatcgaagttcagcaaaatttcataattgtctttaataaaattcatgatctccttaattt 13861252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 22497338 - 22497269
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 83  Q
    ||||||||||||| | | | || ||||||||||||||||||||| |||||| |||| ||||  |||||||    
T  22497338 aatatataaaaattgaagtacaacaaaattttataattgtccttattaaaactcatgatctctttaattt 22497269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 347679 - 347749
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttc 84  Q
    ||||||||||||||  | |||| ||||||||||||||  ||||| |||||| |||||||||||||||||||    
T  347679 aatatataaaaatcaaagtccaccaaaattttataataatccttattaaaactcattatcttcttaatttc 347749  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 348301 - 348371
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttc 84  Q
    ||||||||||||||  | |||| |||||||| ||||| |||||| |||||| |||||||||||||||||||    
T  348301 aatatataaaaatcaaagtccaccaaaatttcataatcgtccttattaaaactcattatcttcttaatttc 348371  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 5602277 - 5602347
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttc 84  Q
    ||||||||||||||  | |||| |||||||| ||||  |||||| |||||| ||||||||||||| |||||    
T  5602277 aatatataaaaatcaaagtccaccaaaatttcataaccgtccttattaaaactcattatcttctttatttc 5602347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 37745151 - 37745221
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttc 84  Q
    ||||||||||||||  | |||| |||||||| ||| | |||||| |||||| |||||||||||||||||||    
T  37745151 aatatataaaaatcaaagtccaccaaaatttcatagtcgtccttattaaaactcattatcttcttaatttc 37745221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 32094999 - 32095068
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 83  Q
    ||||||||||||||  | ||||||||||||| ||||| ||| || |||||| |||| |||| ||||||||    
T  32094999 aatatataaaaatcaaagtccagcaaaatttcataatagtctttattaaaactcatgatctccttaattt 32095068  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 14911490 - 14911448
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcct 56  Q
    ||||||||||||||| | |||||||||||||||||||||||||    
T  14911490 aatatataaaaatcgaagtccagcaaaattttataattgtcct 14911448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 14203933 - 14204003
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttc 84  Q
    ||||||||||||||  | |||| |||||||| |||||  ||||| |||||| |||||||||||||||||||    
T  14203933 aatatataaaaatcaaagtccatcaaaatttcataataatccttattaaaactcattatcttcttaatttc 14204003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 37082437 - 37082506
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 83  Q
    ||||||||||||||  | |||| |||||||| |||||  ||||| |||||| ||||||||||||||||||    
T  37082437 aatatataaaaatcaaagtccaccaaaatttcataataatccttattaaaactcattatcttcttaattt 37082506  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 33881572 - 33881615
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctt 57  Q
    |||||||||||||||| ||||| |||||||| ||||||||||||    
T  33881572 aatatataaaaatcgttctccaacaaaatttcataattgtcctt 33881615  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 14204568 - 14204633
Alignment:
Q  19 ataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttc 84  Q
    |||||||||  | |||| |||||||| ||||| ||| || |||||| |||||||||||||||||||    
T  14204568 ataaaaatcaaagtccaccaaaatttcataatcgtctttattaaaactcattatcttcttaatttc 14204633  T

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Target: scaffold2013 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold2013
Description:

Target: scaffold2013; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 503 - 572
Alignment:
Q  14 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 83  Q
    ||||||||||||||  | |||| |||| ||| |||||  ||||| |||||| ||||||||||||||||||    
T  503 aatatataaaaatcaaagtccaccaaattttcataataatccttattaaaactcattatcttcttaattt 572  T

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