View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14508_low_4 (Length: 413)
Name: NF14508_low_4
Description: NF14508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14508_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 13 - 397
Target Start/End: Complemental strand, 8270354 - 8269970
Alignment:
| Q |
13 |
attgagatgagaatatgtatacctataaggtctgatggaacctttccgttgctaaatcgacctgttgcaatccctcctggaaaatcttttccatatggtg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8270354 |
attgagatgagaatatgtatacctataaggtctgatggaacctttccgttgctaaatcgacctgttgcaatccctcctggaaaatcttttccatatggtg |
8270255 |
T |
|
| Q |
113 |
caaaatcgcatcgagctattgnnnnnnnaaagttgttatttcctgtatccgtaattgaatctccaaacacaaacactgctggaattgaaacatttggttg |
212 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8270254 |
caaaatcgcatcgagctattgtttttttaaagttgttatttcctgtatccgtaattgaatctccaaacacaaacactgctggaattgaaacatttggttg |
8270155 |
T |
|
| Q |
213 |
aagtttgactatagcctttgtttcaaagcaaacaactaaaaacaatatcaagtggagaaggatagtgtaaattaaattcatagaaaaatccacgaataac |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8270154 |
aagtttgactatagcctttgtttcaaagcaaacaactaaaaacaatatcaagtggagaaggatagtgtaaattaaattcatagaaaaatccatgaataac |
8270055 |
T |
|
| Q |
313 |
atagaaatgtagatttggctctttgtatattaacaagtggagttatatataactctaattgctgctatacatagtagagtttaat |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8270054 |
atagaaatgtagatttggctctttgtatattaacaagtggaattatatataactctaattgctgctatacatagtagagtttaat |
8269970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 32 - 235
Target Start/End: Complemental strand, 8231187 - 8230981
Alignment:
| Q |
32 |
tacctataaggtctgatggaacctttccgttgctaaatcgacctgttgcaatccctcctggaaaatcttttccatatggtgcaaaatcgcatcgagctat |
131 |
Q |
| |
|
||||||| | |||||| ||||| ||||| |||||||||| || |||| ||| |||||| ||||||||| ||||| |||| ||||| ||| |||||| | |
|
|
| T |
8231187 |
tacctatgaagtctgagggaacttttccattgctaaatcttccggttggaattcctcctttaaaatctttcccataaggtggaaaattgcaacgagctgt |
8231088 |
T |
|
| Q |
132 |
tgnnnnnnnaaagttgttattt---cctgtatccgtaattgaatctccaaacacaaacactgctggaattgaaacatttggttgaagtttgactatagcc |
228 |
Q |
| |
|
|| | ||||||||| ||||||||| || |||||||||||||| ||||||||||||| ||||||||||||| |||||| ||||||| || |
|
|
| T |
8231087 |
tgttctcaaattgttgttattgttacctgtatccacgatagaatctccaaacaccaacactgctggaactgaaacatttggtggaagttggactataccc |
8230988 |
T |
|
| Q |
229 |
tttgttt |
235 |
Q |
| |
|
||||||| |
|
|
| T |
8230987 |
tttgttt |
8230981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 8252762 - 8252684
Alignment:
| Q |
32 |
tacctataaggtctgatggaacctttccgttgctaaatcgacctgttgcaatccctcctggaaaatcttttccatatgg |
110 |
Q |
| |
|
|||||||||| |||| |||||||||||| |||||||||| ||||||| ||| |||||| ||||||||||||||||||| |
|
|
| T |
8252762 |
tacctataagatctgctggaacctttccattgctaaatcttcctgttggaattcctccttgaaaatcttttccatatgg |
8252684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 197
Target Start/End: Complemental strand, 8242772 - 8242621
Alignment:
| Q |
46 |
gatggaacctttccgttgctaaatcgacctgttgcaatccctcctggaaaatcttttccatatggtgcaaaatcgcatcgagctattgnnnnnnnaaagt |
145 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||| |||||| ||||||||| |||||||| | ||| ||| |||| | || || |
|
|
| T |
8242772 |
gatggaacctttccgttgctaaatcttcctgttggaattcctcctttaaaatctttcccatatggagggtaattgcaccgagatggtgttgtcatgttgt |
8242673 |
T |
|
| Q |
146 |
tgttatttcctgtatccgtaattgaatctccaaacacaaacactgctggaat |
197 |
Q |
| |
|
|||||||||| |||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
8242672 |
tgttatttccagtatccatgattgaatctccaaacacaaacactgctggaat |
8242621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 8252650 - 8252559
Alignment:
| Q |
144 |
gttgttatttcctgtatccgtaattgaatctccaaacacaaacactgctggaattgaaacatttggttgaagtttgactatagcctttgttt |
235 |
Q |
| |
|
|||||||||||| |||||| | |||||||||||||| |||||||||||||||| ||| |||||||| | ||||| | ||||| ||||||| |
|
|
| T |
8252650 |
gttgttatttccagtatccatgattgaatctccaaatacaaacactgctggaaacgaagcatttggtggcagtttcaaaatagcttttgttt |
8252559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 53274254 - 53274196
Alignment:
| Q |
157 |
gtatccgtaattgaatctccaaacacaaacactgctggaattgaaacatttggttgaag |
215 |
Q |
| |
|
|||||| | |||||||||||||||||||| |||||||||| ||||||||||||| |||| |
|
|
| T |
53274254 |
gtatccatgattgaatctccaaacacaaatactgctggaaatgaaacatttggtggaag |
53274196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University